Hb_000062_450

Information

Type -
Description -
Location Contig62: 331714-332631
Sequence    

Annotation

kegg
ID mtr:MTR_081s0009
description hypothetical protein
nr
ID XP_003637307.1
description hypothetical protein MTR_081s0009, partial [Medicago truncatula]
swissprot
ID -
description -
trembl
ID G7ZZ07
description Putative uncharacterized protein (Fragment) OS=Medicago truncatula GN=MTR_081s0009 PE=4 SV=1
Gene Ontology
ID GO:0005524
description cyclin-dependent kinase g-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51469: 331189-344766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000062_450 0.0 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]
2 Hb_005801_020 0.1029459412 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
3 Hb_006909_010 0.1088894623 - - 5-oxoprolinase, putative [Ricinus communis]
4 Hb_156279_010 0.1102928258 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
5 Hb_025193_040 0.1107661164 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
6 Hb_000815_170 0.1109007342 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
7 Hb_004143_160 0.1125156554 - - SAB, putative [Ricinus communis]
8 Hb_135572_010 0.1155074063 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
9 Hb_001005_050 0.119685497 - - hypothetical protein Csa_3G599480 [Cucumis sativus]
10 Hb_011616_020 0.1244856653 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
11 Hb_002667_050 0.1246136652 - - PREDICTED: alpha-mannosidase 2 [Jatropha curcas]
12 Hb_009270_010 0.1252907376 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
13 Hb_003498_130 0.1273541091 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Citrus sinensis]
14 Hb_000922_030 0.1273680473 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
15 Hb_001227_080 0.1281961805 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_099270_030 0.1283144635 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
17 Hb_007994_010 0.1290075807 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3 isoform X1 [Jatropha curcas]
18 Hb_003544_140 0.1316206221 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
19 Hb_002639_080 0.1335328726 - - PREDICTED: large proline-rich protein BAG6 isoform X1 [Jatropha curcas]
20 Hb_019337_020 0.1335919378 - - K+ uptake permease 11 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_000062_450 Hb_000062_450 Hb_005801_020 Hb_005801_020 Hb_000062_450--Hb_005801_020 Hb_006909_010 Hb_006909_010 Hb_000062_450--Hb_006909_010 Hb_156279_010 Hb_156279_010 Hb_000062_450--Hb_156279_010 Hb_025193_040 Hb_025193_040 Hb_000062_450--Hb_025193_040 Hb_000815_170 Hb_000815_170 Hb_000062_450--Hb_000815_170 Hb_004143_160 Hb_004143_160 Hb_000062_450--Hb_004143_160 Hb_005801_020--Hb_000815_170 Hb_005801_020--Hb_156279_010 Hb_135572_010 Hb_135572_010 Hb_005801_020--Hb_135572_010 Hb_000661_030 Hb_000661_030 Hb_005801_020--Hb_000661_030 Hb_012098_070 Hb_012098_070 Hb_005801_020--Hb_012098_070 Hb_006618_050 Hb_006618_050 Hb_005801_020--Hb_006618_050 Hb_164898_010 Hb_164898_010 Hb_006909_010--Hb_164898_010 Hb_004449_080 Hb_004449_080 Hb_006909_010--Hb_004449_080 Hb_000106_120 Hb_000106_120 Hb_006909_010--Hb_000106_120 Hb_003498_130 Hb_003498_130 Hb_006909_010--Hb_003498_130 Hb_000028_390 Hb_000028_390 Hb_006909_010--Hb_000028_390 Hb_003294_090 Hb_003294_090 Hb_006909_010--Hb_003294_090 Hb_156279_010--Hb_000815_170 Hb_005250_030 Hb_005250_030 Hb_156279_010--Hb_005250_030 Hb_099270_030 Hb_099270_030 Hb_156279_010--Hb_099270_030 Hb_156279_010--Hb_006618_050 Hb_006295_020 Hb_006295_020 Hb_156279_010--Hb_006295_020 Hb_002025_330 Hb_002025_330 Hb_025193_040--Hb_002025_330 Hb_025193_040--Hb_004143_160 Hb_001963_100 Hb_001963_100 Hb_025193_040--Hb_001963_100 Hb_001440_030 Hb_001440_030 Hb_025193_040--Hb_001440_030 Hb_000922_030 Hb_000922_030 Hb_025193_040--Hb_000922_030 Hb_000872_010 Hb_000872_010 Hb_025193_040--Hb_000872_010 Hb_000815_170--Hb_135572_010 Hb_000815_170--Hb_005250_030 Hb_001623_280 Hb_001623_280 Hb_000815_170--Hb_001623_280 Hb_000714_040 Hb_000714_040 Hb_000815_170--Hb_000714_040 Hb_004048_120 Hb_004048_120 Hb_004143_160--Hb_004048_120 Hb_000358_050 Hb_000358_050 Hb_004143_160--Hb_000358_050 Hb_007994_010 Hb_007994_010 Hb_004143_160--Hb_007994_010 Hb_004143_160--Hb_002025_330 Hb_004143_160--Hb_135572_010 Hb_002639_080 Hb_002639_080 Hb_004143_160--Hb_002639_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.7033 8.89386 2.85742 8.57623 11.0547 14.7439
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.05503 3.28458 9.01432 17.5316 23.6355

CAGE analysis