Hb_012098_070

Information

Type -
Description -
Location Contig12098: 55157-60434
Sequence    

Annotation

kegg
ID cic:CICLE_v10000890mg
description hypothetical protein
nr
ID XP_012071350.1
description PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KRP0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05038 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06454: 55139-57120
cDNA
(Sanger)
(ID:Location)		 040_A19.ab1: 55139-57120

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012098_070 0.0 - - PREDICTED: uncharacterized protein LOC105633371 [Jatropha curcas]
2 Hb_099270_030 0.0864097906 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X2 [Jatropha curcas]
3 Hb_005488_170 0.0870663379 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
4 Hb_000815_170 0.088462049 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
5 Hb_003607_070 0.0893373029 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
6 Hb_005801_020 0.0903758982 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
7 Hb_005250_030 0.091918562 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
8 Hb_156279_010 0.0946505245 transcription factor TF Family: Jumonji PREDICTED: uncharacterized protein LOC105641053 isoform X1 [Jatropha curcas]
9 Hb_000365_240 0.0947572625 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
10 Hb_005701_130 0.0995346716 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
11 Hb_005348_010 0.1004432444 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003089_020 0.101634992 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
13 Hb_012053_090 0.1047809113 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
14 Hb_135572_010 0.1047969256 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
15 Hb_000329_750 0.1051810372 - - PREDICTED: uncharacterized protein LOC105643205 [Jatropha curcas]
16 Hb_000714_040 0.1053213061 - - PREDICTED: uncharacterized protein LOC105634664 isoform X2 [Jatropha curcas]
17 Hb_010998_020 0.106955512 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
18 Hb_007545_130 0.1074313233 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
19 Hb_000087_140 0.107704278 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27270 isoform X1 [Jatropha curcas]
20 Hb_003506_050 0.1090637992 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_012098_070 Hb_012098_070 Hb_099270_030 Hb_099270_030 Hb_012098_070--Hb_099270_030 Hb_005488_170 Hb_005488_170 Hb_012098_070--Hb_005488_170 Hb_000815_170 Hb_000815_170 Hb_012098_070--Hb_000815_170 Hb_003607_070 Hb_003607_070 Hb_012098_070--Hb_003607_070 Hb_005801_020 Hb_005801_020 Hb_012098_070--Hb_005801_020 Hb_005250_030 Hb_005250_030 Hb_012098_070--Hb_005250_030 Hb_001726_050 Hb_001726_050 Hb_099270_030--Hb_001726_050 Hb_005348_010 Hb_005348_010 Hb_099270_030--Hb_005348_010 Hb_156279_010 Hb_156279_010 Hb_099270_030--Hb_156279_010 Hb_099270_030--Hb_005488_170 Hb_000714_040 Hb_000714_040 Hb_099270_030--Hb_000714_040 Hb_002600_060 Hb_002600_060 Hb_005488_170--Hb_002600_060 Hb_005701_130 Hb_005701_130 Hb_005488_170--Hb_005701_130 Hb_002909_120 Hb_002909_120 Hb_005488_170--Hb_002909_120 Hb_010998_020 Hb_010998_020 Hb_005488_170--Hb_010998_020 Hb_012053_090 Hb_012053_090 Hb_005488_170--Hb_012053_090 Hb_005488_170--Hb_005348_010 Hb_000815_170--Hb_156279_010 Hb_000815_170--Hb_005801_020 Hb_135572_010 Hb_135572_010 Hb_000815_170--Hb_135572_010 Hb_000815_170--Hb_005250_030 Hb_001623_280 Hb_001623_280 Hb_000815_170--Hb_001623_280 Hb_000815_170--Hb_000714_040 Hb_002235_200 Hb_002235_200 Hb_003607_070--Hb_002235_200 Hb_001498_010 Hb_001498_010 Hb_003607_070--Hb_001498_010 Hb_003607_070--Hb_012053_090 Hb_004374_110 Hb_004374_110 Hb_003607_070--Hb_004374_110 Hb_000365_240 Hb_000365_240 Hb_003607_070--Hb_000365_240 Hb_005801_020--Hb_156279_010 Hb_005801_020--Hb_135572_010 Hb_000661_030 Hb_000661_030 Hb_005801_020--Hb_000661_030 Hb_006618_050 Hb_006618_050 Hb_005801_020--Hb_006618_050 Hb_007545_130 Hb_007545_130 Hb_005250_030--Hb_007545_130 Hb_013459_010 Hb_013459_010 Hb_005250_030--Hb_013459_010 Hb_005250_030--Hb_006618_050 Hb_005250_030--Hb_156279_010 Hb_003506_050 Hb_003506_050 Hb_005250_030--Hb_003506_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.844927 0.972611 0.50369 0.646594 0.818484 0.899189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.53504 0.398794 1.04405 0.998144 2.6049

CAGE analysis