Hb_001341_020

Information

Type -
Description -
Location Contig1341: 4480-4833
Sequence    

Annotation

kegg
ID -
description -
nr
ID CFL94023.1
description Uncharacterised protein [Bordetella pertussis]
swissprot
ID -
description -
trembl
ID A0A0A9KAY0
description CARB OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001341_020 0.0 - - Uncharacterised protein [Bordetella pertussis]
2 Hb_005396_060 0.1288037073 - - -
3 Hb_002226_050 0.1514952012 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
4 Hb_006452_240 0.1574502689 - - PREDICTED: mediator of RNA polymerase II transcription subunit 15a isoform X1 [Jatropha curcas]
5 Hb_000022_140 0.1764289254 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
6 Hb_131872_010 0.185788661 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_148593_010 0.1875906014 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
8 Hb_003944_020 0.1892922444 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
9 Hb_005523_010 0.1915579255 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
10 Hb_022958_010 0.1960075586 - - PREDICTED: probable disease resistance protein At4g27220 [Populus euphratica]
11 Hb_003805_070 0.1976998603 - - PREDICTED: sacsin [Jatropha curcas]
12 Hb_003186_040 0.2015986915 - - PREDICTED: protein DENND6A [Jatropha curcas]
13 Hb_078477_060 0.2045903077 - - PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
14 Hb_044380_020 0.2090047397 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
15 Hb_030131_030 0.2107459623 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
16 Hb_000300_310 0.2123477678 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
17 Hb_012305_090 0.2130264863 - - hypothetical protein VITISV_018166 [Vitis vinifera]
18 Hb_090530_010 0.217201912 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
19 Hb_000529_140 0.2172670395 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011616_020 0.2181277286 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]

Gene co-expression network

sample Hb_001341_020 Hb_001341_020 Hb_005396_060 Hb_005396_060 Hb_001341_020--Hb_005396_060 Hb_002226_050 Hb_002226_050 Hb_001341_020--Hb_002226_050 Hb_006452_240 Hb_006452_240 Hb_001341_020--Hb_006452_240 Hb_000022_140 Hb_000022_140 Hb_001341_020--Hb_000022_140 Hb_131872_010 Hb_131872_010 Hb_001341_020--Hb_131872_010 Hb_148593_010 Hb_148593_010 Hb_001341_020--Hb_148593_010 Hb_012305_090 Hb_012305_090 Hb_005396_060--Hb_012305_090 Hb_005396_060--Hb_000022_140 Hb_003944_020 Hb_003944_020 Hb_005396_060--Hb_003944_020 Hb_005396_060--Hb_006452_240 Hb_005396_060--Hb_002226_050 Hb_002639_110 Hb_002639_110 Hb_002226_050--Hb_002639_110 Hb_030131_030 Hb_030131_030 Hb_002226_050--Hb_030131_030 Hb_003089_020 Hb_003089_020 Hb_002226_050--Hb_003089_020 Hb_001223_010 Hb_001223_010 Hb_002226_050--Hb_001223_010 Hb_032258_010 Hb_032258_010 Hb_002226_050--Hb_032258_010 Hb_007546_030 Hb_007546_030 Hb_006452_240--Hb_007546_030 Hb_003805_070 Hb_003805_070 Hb_006452_240--Hb_003805_070 Hb_000589_380 Hb_000589_380 Hb_006452_240--Hb_000589_380 Hb_006452_240--Hb_001223_010 Hb_000800_110 Hb_000800_110 Hb_006452_240--Hb_000800_110 Hb_000529_140 Hb_000529_140 Hb_000022_140--Hb_000529_140 Hb_000404_040 Hb_000404_040 Hb_000022_140--Hb_000404_040 Hb_005523_010 Hb_005523_010 Hb_000022_140--Hb_005523_010 Hb_000739_210 Hb_000739_210 Hb_000022_140--Hb_000739_210 Hb_003186_040 Hb_003186_040 Hb_000022_140--Hb_003186_040 Hb_131102_010 Hb_131102_010 Hb_131872_010--Hb_131102_010 Hb_131872_010--Hb_002226_050 Hb_007054_050 Hb_007054_050 Hb_131872_010--Hb_007054_050 Hb_062671_010 Hb_062671_010 Hb_131872_010--Hb_062671_010 Hb_131872_010--Hb_003944_020 Hb_148593_010--Hb_003805_070 Hb_148593_010--Hb_006452_240 Hb_000236_450 Hb_000236_450 Hb_148593_010--Hb_000236_450 Hb_011616_020 Hb_011616_020 Hb_148593_010--Hb_011616_020 Hb_148593_010--Hb_005523_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.02479 4.08749 2.1292 1.06985 1.57078 5.59907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.78584 1.00242 4.61153 14.3495 27.2422

CAGE analysis