Hb_003944_020

Information

Type -
Description -
Location Contig3944: 35441-40249
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11000g
description T-complex protein 11
nr
ID XP_011003958.1
description PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5FSK9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s11000g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003944_020 0.0 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
2 Hb_001341_020 0.1892922444 - - Uncharacterised protein [Bordetella pertussis]
3 Hb_005396_060 0.1988041289 - - -
4 Hb_000022_140 0.2044040332 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
5 Hb_004650_060 0.2165744688 - - putative retrotransposon protein [Phyllostachys edulis]
6 Hb_092650_010 0.2233746757 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
7 Hb_066487_010 0.231449886 - - conserved hypothetical protein [Ricinus communis]
8 Hb_148593_010 0.2335098096 - - PREDICTED: serine/threonine-protein kinase ATR-like [Jatropha curcas]
9 Hb_002304_070 0.2350540388 - - -
10 Hb_001010_070 0.2353877246 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
11 Hb_131872_010 0.2357420338 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_003186_040 0.2382365176 - - PREDICTED: protein DENND6A [Jatropha curcas]
13 Hb_006569_050 0.2388833957 - - -
14 Hb_049275_010 0.2413688107 - - PREDICTED: F-box/LRR-repeat protein 4-like [Populus euphratica]
15 Hb_003089_020 0.2445190806 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
16 Hb_003805_070 0.2449230894 - - PREDICTED: sacsin [Jatropha curcas]
17 Hb_011386_020 0.2455533697 - - unnamed protein product [Vitis vinifera]
18 Hb_002226_050 0.2463516521 - - PREDICTED: uncharacterized protein LOC105641366 isoform X1 [Jatropha curcas]
19 Hb_181026_010 0.2468881897 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
20 Hb_006274_050 0.2478571535 - - hypothetical protein VITISV_022618 [Vitis vinifera]

Gene co-expression network

sample Hb_003944_020 Hb_003944_020 Hb_001341_020 Hb_001341_020 Hb_003944_020--Hb_001341_020 Hb_005396_060 Hb_005396_060 Hb_003944_020--Hb_005396_060 Hb_000022_140 Hb_000022_140 Hb_003944_020--Hb_000022_140 Hb_004650_060 Hb_004650_060 Hb_003944_020--Hb_004650_060 Hb_092650_010 Hb_092650_010 Hb_003944_020--Hb_092650_010 Hb_066487_010 Hb_066487_010 Hb_003944_020--Hb_066487_010 Hb_001341_020--Hb_005396_060 Hb_002226_050 Hb_002226_050 Hb_001341_020--Hb_002226_050 Hb_006452_240 Hb_006452_240 Hb_001341_020--Hb_006452_240 Hb_001341_020--Hb_000022_140 Hb_131872_010 Hb_131872_010 Hb_001341_020--Hb_131872_010 Hb_148593_010 Hb_148593_010 Hb_001341_020--Hb_148593_010 Hb_012305_090 Hb_012305_090 Hb_005396_060--Hb_012305_090 Hb_005396_060--Hb_000022_140 Hb_005396_060--Hb_006452_240 Hb_005396_060--Hb_002226_050 Hb_000529_140 Hb_000529_140 Hb_000022_140--Hb_000529_140 Hb_000404_040 Hb_000404_040 Hb_000022_140--Hb_000404_040 Hb_005523_010 Hb_005523_010 Hb_000022_140--Hb_005523_010 Hb_000739_210 Hb_000739_210 Hb_000022_140--Hb_000739_210 Hb_003186_040 Hb_003186_040 Hb_000022_140--Hb_003186_040 Hb_043708_010 Hb_043708_010 Hb_004650_060--Hb_043708_010 Hb_002534_030 Hb_002534_030 Hb_004650_060--Hb_002534_030 Hb_005588_110 Hb_005588_110 Hb_004650_060--Hb_005588_110 Hb_000154_010 Hb_000154_010 Hb_004650_060--Hb_000154_010 Hb_005282_020 Hb_005282_020 Hb_004650_060--Hb_005282_020 Hb_000012_160 Hb_000012_160 Hb_004650_060--Hb_000012_160 Hb_020411_010 Hb_020411_010 Hb_092650_010--Hb_020411_010 Hb_001221_340 Hb_001221_340 Hb_092650_010--Hb_001221_340 Hb_000157_110 Hb_000157_110 Hb_092650_010--Hb_000157_110 Hb_002400_150 Hb_002400_150 Hb_092650_010--Hb_002400_150 Hb_076226_010 Hb_076226_010 Hb_092650_010--Hb_076226_010 Hb_012098_070 Hb_012098_070 Hb_066487_010--Hb_012098_070 Hb_020665_010 Hb_020665_010 Hb_066487_010--Hb_020665_010 Hb_001005_050 Hb_001005_050 Hb_066487_010--Hb_001005_050 Hb_007820_010 Hb_007820_010 Hb_066487_010--Hb_007820_010 Hb_003467_030 Hb_003467_030 Hb_066487_010--Hb_003467_030 Hb_006274_050 Hb_006274_050 Hb_066487_010--Hb_006274_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0523887 0.212593 0.0619457 0.130704 0.0508564 0.653196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.154071 0.193985 0.625583 0.764849 1.70546

CAGE analysis