Hb_000154_010

Information

Type -
Description -
Location Contig154: 30292-35003
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000154_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_004650_060 0.1978366362 - - putative retrotransposon protein [Phyllostachys edulis]
3 Hb_133820_010 0.2221052207 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_006132_030 0.2243330587 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
5 Hb_043708_010 0.2353219639 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
6 Hb_000160_320 0.2511124593 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
7 Hb_036988_010 0.2532512706 - - hypothetical protein JCGZ_25496 [Jatropha curcas]
8 Hb_000772_040 0.2533488336 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
9 Hb_000399_010 0.2625121758 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
10 Hb_004734_010 0.2629791165 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
11 Hb_000329_290 0.2652814191 transcription factor TF Family: GRAS PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 6 [Jatropha curcas]
12 Hb_011484_010 0.2683166931 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_131102_010 0.2694398466 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_020301_030 0.2713502157 - - calmodulin binding protein, putative [Ricinus communis]
15 Hb_086077_020 0.2741991495 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
16 Hb_002791_020 0.2765651073 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
17 Hb_000120_040 0.2782131411 - - -
18 Hb_011386_020 0.2799967513 - - unnamed protein product [Vitis vinifera]
19 Hb_009615_120 0.2800458305 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
20 Hb_000283_080 0.28357033 - - -

Gene co-expression network

sample Hb_000154_010 Hb_000154_010 Hb_004650_060 Hb_004650_060 Hb_000154_010--Hb_004650_060 Hb_133820_010 Hb_133820_010 Hb_000154_010--Hb_133820_010 Hb_006132_030 Hb_006132_030 Hb_000154_010--Hb_006132_030 Hb_043708_010 Hb_043708_010 Hb_000154_010--Hb_043708_010 Hb_000160_320 Hb_000160_320 Hb_000154_010--Hb_000160_320 Hb_036988_010 Hb_036988_010 Hb_000154_010--Hb_036988_010 Hb_004650_060--Hb_043708_010 Hb_002534_030 Hb_002534_030 Hb_004650_060--Hb_002534_030 Hb_005588_110 Hb_005588_110 Hb_004650_060--Hb_005588_110 Hb_005282_020 Hb_005282_020 Hb_004650_060--Hb_005282_020 Hb_000012_160 Hb_000012_160 Hb_004650_060--Hb_000012_160 Hb_131102_010 Hb_131102_010 Hb_133820_010--Hb_131102_010 Hb_122556_010 Hb_122556_010 Hb_133820_010--Hb_122556_010 Hb_133820_010--Hb_006132_030 Hb_011484_010 Hb_011484_010 Hb_133820_010--Hb_011484_010 Hb_086077_020 Hb_086077_020 Hb_133820_010--Hb_086077_020 Hb_005344_030 Hb_005344_030 Hb_006132_030--Hb_005344_030 Hb_006132_030--Hb_011484_010 Hb_000702_080 Hb_000702_080 Hb_006132_030--Hb_000702_080 Hb_000052_020 Hb_000052_020 Hb_006132_030--Hb_000052_020 Hb_019656_010 Hb_019656_010 Hb_043708_010--Hb_019656_010 Hb_043708_010--Hb_131102_010 Hb_002791_020 Hb_002791_020 Hb_043708_010--Hb_002791_020 Hb_008730_010 Hb_008730_010 Hb_043708_010--Hb_008730_010 Hb_000283_080 Hb_000283_080 Hb_000160_320--Hb_000283_080 Hb_007747_210 Hb_007747_210 Hb_000160_320--Hb_007747_210 Hb_003734_110 Hb_003734_110 Hb_000160_320--Hb_003734_110 Hb_000883_060 Hb_000883_060 Hb_000160_320--Hb_000883_060 Hb_011386_020 Hb_011386_020 Hb_000160_320--Hb_011386_020 Hb_001898_160 Hb_001898_160 Hb_000160_320--Hb_001898_160 Hb_000684_440 Hb_000684_440 Hb_036988_010--Hb_000684_440 Hb_001294_010 Hb_001294_010 Hb_036988_010--Hb_001294_010 Hb_000786_030 Hb_000786_030 Hb_036988_010--Hb_000786_030 Hb_002422_070 Hb_002422_070 Hb_036988_010--Hb_002422_070 Hb_000479_140 Hb_000479_140 Hb_036988_010--Hb_000479_140 Hb_002307_170 Hb_002307_170 Hb_036988_010--Hb_002307_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0179385 0.0191685 0.00331435 0.00328939 0 0.0275574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0203144 0.015987 0.061454 0.0063304 0.0857172

CAGE analysis