Hb_133820_010

Information

Type -
Description -
Location Contig133820: 16-648
Sequence    

Annotation

kegg
ID vvi:104880542
description uncharacterized LOC104880542
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID M5X4P9
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa025968mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_133820_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_131102_010 0.1724295362 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_122556_010 0.1913966075 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
4 Hb_000154_010 0.2221052207 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_006132_030 0.2251865225 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
6 Hb_011484_010 0.2391624037 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_086077_020 0.2515051509 - - hypothetical protein PHAVU_001G054900g [Phaseolus vulgaris]
8 Hb_003523_040 0.2540347882 - - F15O4.13 [Arabidopsis thaliana]
9 Hb_043708_010 0.2646933039 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
10 Hb_004650_060 0.2686845706 - - putative retrotransposon protein [Phyllostachys edulis]
11 Hb_159036_010 0.2690619897 - - -
12 Hb_010977_010 0.2718113386 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_007054_050 0.2737434081 - - -
14 Hb_123046_010 0.2772743126 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
15 Hb_002888_020 0.2800335996 - - -
16 Hb_000052_020 0.2825114315 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
17 Hb_019656_010 0.2834701436 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_131872_010 0.2877774794 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_001172_090 0.2901267067 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
20 Hb_004440_080 0.290244827 - - PREDICTED: syntaxin-112 [Populus euphratica]

Gene co-expression network

sample Hb_133820_010 Hb_133820_010 Hb_131102_010 Hb_131102_010 Hb_133820_010--Hb_131102_010 Hb_122556_010 Hb_122556_010 Hb_133820_010--Hb_122556_010 Hb_000154_010 Hb_000154_010 Hb_133820_010--Hb_000154_010 Hb_006132_030 Hb_006132_030 Hb_133820_010--Hb_006132_030 Hb_011484_010 Hb_011484_010 Hb_133820_010--Hb_011484_010 Hb_086077_020 Hb_086077_020 Hb_133820_010--Hb_086077_020 Hb_131872_010 Hb_131872_010 Hb_131102_010--Hb_131872_010 Hb_019656_010 Hb_019656_010 Hb_131102_010--Hb_019656_010 Hb_043708_010 Hb_043708_010 Hb_131102_010--Hb_043708_010 Hb_001450_010 Hb_001450_010 Hb_131102_010--Hb_001450_010 Hb_004650_060 Hb_004650_060 Hb_131102_010--Hb_004650_060 Hb_159036_010 Hb_159036_010 Hb_122556_010--Hb_159036_010 Hb_003523_040 Hb_003523_040 Hb_122556_010--Hb_003523_040 Hb_094900_010 Hb_094900_010 Hb_122556_010--Hb_094900_010 Hb_122556_010--Hb_011484_010 Hb_122556_010--Hb_006132_030 Hb_000154_010--Hb_004650_060 Hb_000154_010--Hb_006132_030 Hb_000154_010--Hb_043708_010 Hb_000160_320 Hb_000160_320 Hb_000154_010--Hb_000160_320 Hb_036988_010 Hb_036988_010 Hb_000154_010--Hb_036988_010 Hb_005344_030 Hb_005344_030 Hb_006132_030--Hb_005344_030 Hb_006132_030--Hb_011484_010 Hb_000702_080 Hb_000702_080 Hb_006132_030--Hb_000702_080 Hb_000052_020 Hb_000052_020 Hb_006132_030--Hb_000052_020 Hb_000399_010 Hb_000399_010 Hb_011484_010--Hb_000399_010 Hb_020334_010 Hb_020334_010 Hb_011484_010--Hb_020334_010 Hb_026239_010 Hb_026239_010 Hb_011484_010--Hb_026239_010 Hb_000853_410 Hb_000853_410 Hb_011484_010--Hb_000853_410 Hb_061802_010 Hb_061802_010 Hb_011484_010--Hb_061802_010 Hb_004440_080 Hb_004440_080 Hb_086077_020--Hb_004440_080 Hb_000012_460 Hb_000012_460 Hb_086077_020--Hb_000012_460 Hb_000258_340 Hb_000258_340 Hb_086077_020--Hb_000258_340 Hb_010977_010 Hb_010977_010 Hb_086077_020--Hb_010977_010 Hb_000772_040 Hb_000772_040 Hb_086077_020--Hb_000772_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.193265 0.102219 0 0 0 0.0928615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.280009 0.146724 0.258564 0.0899843 0.858857

CAGE analysis