Hb_003523_040

Information

Type -
Description -
Location Contig3523: 38907-48694
Sequence    

Annotation

kegg
ID brp:103874877
description uncharacterized LOC103874877
nr
ID AAF79348.1
description F15O4.13 [Arabidopsis thaliana]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID Q9LQH2
description F15O4.13 OS=Arabidopsis thaliana PE=4 SV=1
Gene Ontology
ID GO:0003676
description gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003523_040 0.0 - - F15O4.13 [Arabidopsis thaliana]
2 Hb_122556_010 0.2341695881 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_043708_010 0.2461021362 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
4 Hb_094900_010 0.2508107114 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_133820_010 0.2540347882 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_159036_010 0.2700112972 - - -
7 Hb_123046_010 0.2803761155 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
8 Hb_003005_040 0.2987254376 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_002599_040 0.3021511015 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
10 Hb_131102_010 0.3035738295 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_004650_060 0.3041338001 - - putative retrotransposon protein [Phyllostachys edulis]
12 Hb_000154_010 0.3089323369 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_012034_010 0.3154359075 - - -
14 Hb_001229_020 0.3173477878 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
15 Hb_166124_010 0.3176460683 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
16 Hb_005344_030 0.3181747413 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
17 Hb_007479_030 0.3182823712 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
18 Hb_139576_010 0.3185917186 - - PREDICTED: uncharacterized protein LOC105795953 [Gossypium raimondii]
19 Hb_006132_030 0.3229726231 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
20 Hb_007054_050 0.3278623091 - - -

Gene co-expression network

sample Hb_003523_040 Hb_003523_040 Hb_122556_010 Hb_122556_010 Hb_003523_040--Hb_122556_010 Hb_043708_010 Hb_043708_010 Hb_003523_040--Hb_043708_010 Hb_094900_010 Hb_094900_010 Hb_003523_040--Hb_094900_010 Hb_133820_010 Hb_133820_010 Hb_003523_040--Hb_133820_010 Hb_159036_010 Hb_159036_010 Hb_003523_040--Hb_159036_010 Hb_123046_010 Hb_123046_010 Hb_003523_040--Hb_123046_010 Hb_122556_010--Hb_133820_010 Hb_122556_010--Hb_159036_010 Hb_122556_010--Hb_094900_010 Hb_011484_010 Hb_011484_010 Hb_122556_010--Hb_011484_010 Hb_006132_030 Hb_006132_030 Hb_122556_010--Hb_006132_030 Hb_004650_060 Hb_004650_060 Hb_043708_010--Hb_004650_060 Hb_019656_010 Hb_019656_010 Hb_043708_010--Hb_019656_010 Hb_131102_010 Hb_131102_010 Hb_043708_010--Hb_131102_010 Hb_002791_020 Hb_002791_020 Hb_043708_010--Hb_002791_020 Hb_000154_010 Hb_000154_010 Hb_043708_010--Hb_000154_010 Hb_008730_010 Hb_008730_010 Hb_043708_010--Hb_008730_010 Hb_000679_220 Hb_000679_220 Hb_094900_010--Hb_000679_220 Hb_119504_010 Hb_119504_010 Hb_094900_010--Hb_119504_010 Hb_094900_010--Hb_159036_010 Hb_005344_030 Hb_005344_030 Hb_094900_010--Hb_005344_030 Hb_133820_010--Hb_131102_010 Hb_133820_010--Hb_000154_010 Hb_133820_010--Hb_006132_030 Hb_133820_010--Hb_011484_010 Hb_086077_020 Hb_086077_020 Hb_133820_010--Hb_086077_020 Hb_016482_010 Hb_016482_010 Hb_159036_010--Hb_016482_010 Hb_159036_010--Hb_133820_010 Hb_012572_020 Hb_012572_020 Hb_159036_010--Hb_012572_020 Hb_123046_010--Hb_131102_010 Hb_123046_010--Hb_133820_010 Hb_154726_010 Hb_154726_010 Hb_123046_010--Hb_154726_010 Hb_123046_010--Hb_159036_010 Hb_170559_010 Hb_170559_010 Hb_123046_010--Hb_170559_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0335954 0.00316999 0.00585047 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0262119 0.0137524 0.066183 0.00544265 0.147723

CAGE analysis