Hb_154726_010

Information

Type -
Description -
Location Contig154726: 38-1728
Sequence    

Annotation

kegg
ID tcc:TCM_045983
description Gag protease polyprotein-like protein
nr
ID XP_012068520.1
description PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID S1S3V9
description Gag protease polyprotein-like protein OS=Theobroma cacao GN=TCM_045983 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_154726_010 0.0 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
2 Hb_001450_010 0.22345458 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
3 Hb_003375_050 0.232233366 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_041813_050 0.2426102096 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
5 Hb_017075_020 0.2426795048 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
6 Hb_057638_010 0.2435610033 - - PREDICTED: uncharacterized protein LOC105637008 [Jatropha curcas]
7 Hb_100288_010 0.2545599299 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
8 Hb_183191_020 0.260763477 - - conserved hypothetical protein [Ricinus communis]
9 Hb_171685_030 0.2624404914 - - URF-1 [Citrullus lanatus]
10 Hb_062192_060 0.2633384387 - - maturase (mitochondrion) [Hevea brasiliensis]
11 Hb_003362_020 0.2664842296 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
12 Hb_115656_010 0.2665951773 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
13 Hb_006615_210 0.2666597828 - - PREDICTED: uncharacterized protein LOC105640677 isoform X2 [Jatropha curcas]
14 Hb_131872_010 0.2686642108 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_000300_310 0.2698798397 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
16 Hb_012707_020 0.2710006048 - - -
17 Hb_002686_060 0.2717722215 - - conserved hypothetical protein [Ricinus communis]
18 Hb_142570_010 0.2718440532 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
19 Hb_159938_010 0.2719090074 - - phosphoprotein phosphatase, putative [Ricinus communis]
20 Hb_005154_090 0.2720779737 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_154726_010 Hb_154726_010 Hb_001450_010 Hb_001450_010 Hb_154726_010--Hb_001450_010 Hb_003375_050 Hb_003375_050 Hb_154726_010--Hb_003375_050 Hb_041813_050 Hb_041813_050 Hb_154726_010--Hb_041813_050 Hb_017075_020 Hb_017075_020 Hb_154726_010--Hb_017075_020 Hb_057638_010 Hb_057638_010 Hb_154726_010--Hb_057638_010 Hb_100288_010 Hb_100288_010 Hb_154726_010--Hb_100288_010 Hb_000614_270 Hb_000614_270 Hb_001450_010--Hb_000614_270 Hb_131102_010 Hb_131102_010 Hb_001450_010--Hb_131102_010 Hb_000011_470 Hb_000011_470 Hb_001450_010--Hb_000011_470 Hb_001158_010 Hb_001158_010 Hb_001450_010--Hb_001158_010 Hb_183191_020 Hb_183191_020 Hb_001450_010--Hb_183191_020 Hb_005154_090 Hb_005154_090 Hb_003375_050--Hb_005154_090 Hb_034197_020 Hb_034197_020 Hb_003375_050--Hb_034197_020 Hb_003375_050--Hb_041813_050 Hb_002482_050 Hb_002482_050 Hb_003375_050--Hb_002482_050 Hb_062192_060 Hb_062192_060 Hb_003375_050--Hb_062192_060 Hb_151401_010 Hb_151401_010 Hb_003375_050--Hb_151401_010 Hb_041813_050--Hb_062192_060 Hb_041813_050--Hb_005154_090 Hb_041813_010 Hb_041813_010 Hb_041813_050--Hb_041813_010 Hb_012092_080 Hb_012092_080 Hb_041813_050--Hb_012092_080 Hb_185058_020 Hb_185058_020 Hb_041813_050--Hb_185058_020 Hb_053079_010 Hb_053079_010 Hb_017075_020--Hb_053079_010 Hb_171685_020 Hb_171685_020 Hb_017075_020--Hb_171685_020 Hb_072212_020 Hb_072212_020 Hb_017075_020--Hb_072212_020 Hb_101733_010 Hb_101733_010 Hb_017075_020--Hb_101733_010 Hb_024411_010 Hb_024411_010 Hb_017075_020--Hb_024411_010 Hb_000920_070 Hb_000920_070 Hb_057638_010--Hb_000920_070 Hb_128531_010 Hb_128531_010 Hb_057638_010--Hb_128531_010 Hb_095835_010 Hb_095835_010 Hb_057638_010--Hb_095835_010 Hb_010810_070 Hb_010810_070 Hb_057638_010--Hb_010810_070 Hb_009848_060 Hb_009848_060 Hb_057638_010--Hb_009848_060 Hb_014324_010 Hb_014324_010 Hb_057638_010--Hb_014324_010 Hb_014548_030 Hb_014548_030 Hb_100288_010--Hb_014548_030 Hb_005396_060 Hb_005396_060 Hb_100288_010--Hb_005396_060 Hb_012305_110 Hb_012305_110 Hb_100288_010--Hb_012305_110 Hb_012305_090 Hb_012305_090 Hb_100288_010--Hb_012305_090 Hb_003362_020 Hb_003362_020 Hb_100288_010--Hb_003362_020 Hb_004987_030 Hb_004987_030 Hb_100288_010--Hb_004987_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0302234 0.0238428 0 0 0.0133058
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0345724 0 0.0509174 0.0869607 0.396748

CAGE analysis