Hb_101733_010

Information

Type -
Description -
Location Contig101733: 4020-4503
Sequence    

Annotation

kegg
ID rcu:RCOM_2025440
description hypothetical protein
nr
ID XP_002534746.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T927
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_2025440 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00827: 4742-5598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101733_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_072212_020 0.1586367352 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
3 Hb_144838_010 0.1688709945 - - hypothetical protein JCGZ_08246 [Jatropha curcas]
4 Hb_088080_030 0.1689047926 - - ribosomal protein S4 [Hevea brasiliensis]
5 Hb_000879_260 0.1714041863 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
6 Hb_007201_010 0.1732573068 - - PREDICTED: uncharacterized protein LOC105631226 isoform X2 [Jatropha curcas]
7 Hb_013420_010 0.1800861394 - - conserved hypothetical protein [Ricinus communis]
8 Hb_034168_010 0.1809227839 - - hypothetical protein [Azospirillum sp. CAG:260]
9 Hb_004374_090 0.1847331931 transcription factor TF Family: HB PREDICTED: homeobox protein BEL1 homolog [Populus euphratica]
10 Hb_003414_040 0.1856373688 - - hypothetical protein VITISV_016691 [Vitis vinifera]
11 Hb_104735_020 0.1867148159 - - ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
12 Hb_000672_130 0.1885180802 - - hypothetical protein POPTR_0010s22870g [Populus trichocarpa]
13 Hb_000012_440 0.189924218 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
14 Hb_003125_100 0.1909303788 - - NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao]
15 Hb_007575_010 0.1922033935 - - PREDICTED: cytochrome P450 71A1 [Vitis vinifera]
16 Hb_000031_200 0.1944367417 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
17 Hb_000920_020 0.1947784074 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
18 Hb_189099_020 0.1958736899 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
19 Hb_002687_070 0.1961800755 - - polyprotein [Ananas comosus]
20 Hb_144027_010 0.1972668514 - - -

Gene co-expression network

sample Hb_101733_010 Hb_101733_010 Hb_072212_020 Hb_072212_020 Hb_101733_010--Hb_072212_020 Hb_144838_010 Hb_144838_010 Hb_101733_010--Hb_144838_010 Hb_088080_030 Hb_088080_030 Hb_101733_010--Hb_088080_030 Hb_000879_260 Hb_000879_260 Hb_101733_010--Hb_000879_260 Hb_007201_010 Hb_007201_010 Hb_101733_010--Hb_007201_010 Hb_013420_010 Hb_013420_010 Hb_101733_010--Hb_013420_010 Hb_062273_010 Hb_062273_010 Hb_072212_020--Hb_062273_010 Hb_062192_030 Hb_062192_030 Hb_072212_020--Hb_062192_030 Hb_042463_020 Hb_042463_020 Hb_072212_020--Hb_042463_020 Hb_072212_020--Hb_088080_030 Hb_189099_020 Hb_189099_020 Hb_072212_020--Hb_189099_020 Hb_034168_070 Hb_034168_070 Hb_072212_020--Hb_034168_070 Hb_007575_010 Hb_007575_010 Hb_144838_010--Hb_007575_010 Hb_017640_010 Hb_017640_010 Hb_144838_010--Hb_017640_010 Hb_002598_030 Hb_002598_030 Hb_144838_010--Hb_002598_030 Hb_000672_130 Hb_000672_130 Hb_144838_010--Hb_000672_130 Hb_147604_010 Hb_147604_010 Hb_144838_010--Hb_147604_010 Hb_001250_030 Hb_001250_030 Hb_144838_010--Hb_001250_030 Hb_088080_030--Hb_189099_020 Hb_000920_020 Hb_000920_020 Hb_088080_030--Hb_000920_020 Hb_003746_020 Hb_003746_020 Hb_088080_030--Hb_003746_020 Hb_088080_030--Hb_062192_030 Hb_041813_030 Hb_041813_030 Hb_088080_030--Hb_041813_030 Hb_042463_030 Hb_042463_030 Hb_000879_260--Hb_042463_030 Hb_000373_140 Hb_000373_140 Hb_000879_260--Hb_000373_140 Hb_101462_010 Hb_101462_010 Hb_000879_260--Hb_101462_010 Hb_077242_020 Hb_077242_020 Hb_000879_260--Hb_077242_020 Hb_079902_010 Hb_079902_010 Hb_000879_260--Hb_079902_010 Hb_001508_010 Hb_001508_010 Hb_000879_260--Hb_001508_010 Hb_004374_090 Hb_004374_090 Hb_007201_010--Hb_004374_090 Hb_003944_010 Hb_003944_010 Hb_007201_010--Hb_003944_010 Hb_003905_030 Hb_003905_030 Hb_007201_010--Hb_003905_030 Hb_000360_010 Hb_000360_010 Hb_007201_010--Hb_000360_010 Hb_010080_070 Hb_010080_070 Hb_007201_010--Hb_010080_070 Hb_001081_050 Hb_001081_050 Hb_007201_010--Hb_001081_050 Hb_027357_010 Hb_027357_010 Hb_013420_010--Hb_027357_010 Hb_013420_010--Hb_042463_020 Hb_171685_040 Hb_171685_040 Hb_013420_010--Hb_171685_040 Hb_013420_010--Hb_072212_020 Hb_013420_010--Hb_034168_070 Hb_012163_050 Hb_012163_050 Hb_013420_010--Hb_012163_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.00783 0.341732 0.212724 0 0.130837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1705 0.13392 0.219586 0.226324 7.73263

CAGE analysis