Hb_001158_010

Information

Type -
Description -
Location Contig1158: 387-4017
Sequence    

Annotation

kegg
ID -
description -
nr
ID WP_042943005.1
description hypothetical protein, partial [Pseudomonas fluorescens]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001158_010 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
2 Hb_006474_010 0.2375260761 - - hypothetical protein VITISV_032357 [Vitis vinifera]
3 Hb_183191_020 0.2376850143 - - conserved hypothetical protein [Ricinus communis]
4 Hb_143004_010 0.24179404 - - PREDICTED: uncharacterized J domain-containing protein C1071.09c [Eucalyptus grandis]
5 Hb_001450_010 0.2439334915 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
6 Hb_000060_060 0.2491061691 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22940 [Jatropha curcas]
7 Hb_004987_030 0.2531694548 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
8 Hb_000159_020 0.2557333675 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
9 Hb_013420_020 0.2611821267 - - conserved hypothetical protein [Ricinus communis]
10 Hb_104735_010 0.2616339066 - - cytochrome c biogenesis C (mitochondrion) [Hevea brasiliensis]
11 Hb_042463_070 0.2629315058 - - 60S ribosomal protein L16, putative [Ricinus communis]
12 Hb_171685_030 0.2630111146 - - URF-1 [Citrullus lanatus]
13 Hb_185839_010 0.2650822316 - - -
14 Hb_021374_020 0.2698405043 - - PREDICTED: uncharacterized protein LOC101298847, partial [Fragaria vesca subsp. vesca]
15 Hb_003739_040 0.2702919684 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
16 Hb_102602_030 0.2711824638 - - hypothetical protein (mitochondrion) [Vicia faba]
17 Hb_006778_010 0.2751694635 - - PREDICTED: uncharacterized protein LOC105803109 [Gossypium raimondii]
18 Hb_156746_010 0.2755848155 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
19 Hb_180367_010 0.2763416842 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
20 Hb_042463_020 0.2772920794 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001158_010 Hb_001158_010 Hb_006474_010 Hb_006474_010 Hb_001158_010--Hb_006474_010 Hb_183191_020 Hb_183191_020 Hb_001158_010--Hb_183191_020 Hb_143004_010 Hb_143004_010 Hb_001158_010--Hb_143004_010 Hb_001450_010 Hb_001450_010 Hb_001158_010--Hb_001450_010 Hb_000060_060 Hb_000060_060 Hb_001158_010--Hb_000060_060 Hb_004987_030 Hb_004987_030 Hb_001158_010--Hb_004987_030 Hb_003567_020 Hb_003567_020 Hb_006474_010--Hb_003567_020 Hb_121041_010 Hb_121041_010 Hb_006474_010--Hb_121041_010 Hb_180367_010 Hb_180367_010 Hb_006474_010--Hb_180367_010 Hb_003739_040 Hb_003739_040 Hb_006474_010--Hb_003739_040 Hb_042463_070 Hb_042463_070 Hb_006474_010--Hb_042463_070 Hb_158203_010 Hb_158203_010 Hb_006474_010--Hb_158203_010 Hb_042463_020 Hb_042463_020 Hb_183191_020--Hb_042463_020 Hb_062192_030 Hb_062192_030 Hb_183191_020--Hb_062192_030 Hb_156746_010 Hb_156746_010 Hb_183191_020--Hb_156746_010 Hb_034168_070 Hb_034168_070 Hb_183191_020--Hb_034168_070 Hb_072212_020 Hb_072212_020 Hb_183191_020--Hb_072212_020 Hb_183191_020--Hb_004987_030 Hb_021374_020 Hb_021374_020 Hb_143004_010--Hb_021374_020 Hb_000789_210 Hb_000789_210 Hb_143004_010--Hb_000789_210 Hb_000668_030 Hb_000668_030 Hb_143004_010--Hb_000668_030 Hb_001115_060 Hb_001115_060 Hb_143004_010--Hb_001115_060 Hb_004984_090 Hb_004984_090 Hb_143004_010--Hb_004984_090 Hb_002281_060 Hb_002281_060 Hb_143004_010--Hb_002281_060 Hb_154726_010 Hb_154726_010 Hb_001450_010--Hb_154726_010 Hb_000614_270 Hb_000614_270 Hb_001450_010--Hb_000614_270 Hb_131102_010 Hb_131102_010 Hb_001450_010--Hb_131102_010 Hb_000011_470 Hb_000011_470 Hb_001450_010--Hb_000011_470 Hb_001450_010--Hb_183191_020 Hb_000060_060--Hb_000614_270 Hb_002599_040 Hb_002599_040 Hb_000060_060--Hb_002599_040 Hb_104735_010 Hb_104735_010 Hb_000060_060--Hb_104735_010 Hb_000060_060--Hb_143004_010 Hb_000060_060--Hb_003739_040 Hb_000060_060--Hb_006474_010 Hb_000012_440 Hb_000012_440 Hb_004987_030--Hb_000012_440 Hb_000699_080 Hb_000699_080 Hb_004987_030--Hb_000699_080 Hb_006925_030 Hb_006925_030 Hb_004987_030--Hb_006925_030 Hb_088080_030 Hb_088080_030 Hb_004987_030--Hb_088080_030 Hb_000120_900 Hb_000120_900 Hb_004987_030--Hb_000120_900 Hb_159305_010 Hb_159305_010 Hb_004987_030--Hb_159305_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0571718 0 0 0 0.0574094 0.0252678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0657417 0 0.0936765 0.104548 1.35163

CAGE analysis