Hb_000012_440

Information

Type -
Description -
Location Contig12: 630472-631306
Sequence    

Annotation

kegg
ID bvg:104901272
description uncharacterized LOC104901272
nr
ID XP_009802879.1
description PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A5X2S4
description Polyprotein OS=Primula vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06041: 631890-632223
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_440 0.0 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
2 Hb_004987_030 0.1355181912 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
3 Hb_005656_150 0.1448398606 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
4 Hb_000699_080 0.1573564627 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
5 Hb_006925_030 0.1580572824 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
6 Hb_088080_030 0.1769721702 - - ribosomal protein S4 [Hevea brasiliensis]
7 Hb_003032_090 0.180315433 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
8 Hb_189099_020 0.1818673519 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
9 Hb_159305_010 0.1829313089 - - rpl2 [Jatropha curcas]
10 Hb_006816_040 0.1881119445 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
11 Hb_000120_900 0.1887337108 - - catalase [Hevea brasiliensis]
12 Hb_101733_010 0.189924218 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000329_520 0.1919317609 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
14 Hb_000038_020 0.1943600597 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
15 Hb_003336_020 0.1968910466 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
16 Hb_012940_020 0.19698379 - - zeaxanthin epoxidase, putative [Ricinus communis]
17 Hb_106692_020 0.1974504542 - - NADH dehydrogenase subunit F, partial (chloroplast) [Hevea sp. Gillespie 4272]
18 Hb_034168_010 0.197605381 - - hypothetical protein [Azospirillum sp. CAG:260]
19 Hb_185274_020 0.1993053067 - - Ycf2 (chloroplast) [Andrographis paniculata]
20 Hb_001338_150 0.2007164275 - - hypothetical chloroplast RF1 [Dillenia indica]

Gene co-expression network

sample Hb_000012_440 Hb_000012_440 Hb_004987_030 Hb_004987_030 Hb_000012_440--Hb_004987_030 Hb_005656_150 Hb_005656_150 Hb_000012_440--Hb_005656_150 Hb_000699_080 Hb_000699_080 Hb_000012_440--Hb_000699_080 Hb_006925_030 Hb_006925_030 Hb_000012_440--Hb_006925_030 Hb_088080_030 Hb_088080_030 Hb_000012_440--Hb_088080_030 Hb_003032_090 Hb_003032_090 Hb_000012_440--Hb_003032_090 Hb_004987_030--Hb_000699_080 Hb_004987_030--Hb_006925_030 Hb_004987_030--Hb_088080_030 Hb_000120_900 Hb_000120_900 Hb_004987_030--Hb_000120_900 Hb_159305_010 Hb_159305_010 Hb_004987_030--Hb_159305_010 Hb_005656_150--Hb_003032_090 Hb_005656_150--Hb_004987_030 Hb_001338_150 Hb_001338_150 Hb_005656_150--Hb_001338_150 Hb_032733_010 Hb_032733_010 Hb_005656_150--Hb_032733_010 Hb_008092_080 Hb_008092_080 Hb_005656_150--Hb_008092_080 Hb_002686_060 Hb_002686_060 Hb_000699_080--Hb_002686_060 Hb_000699_080--Hb_006925_030 Hb_003336_020 Hb_003336_020 Hb_000699_080--Hb_003336_020 Hb_000038_020 Hb_000038_020 Hb_000699_080--Hb_000038_020 Hb_000699_080--Hb_000120_900 Hb_168031_020 Hb_168031_020 Hb_000699_080--Hb_168031_020 Hb_000359_070 Hb_000359_070 Hb_006925_030--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_006925_030--Hb_000360_010 Hb_011900_020 Hb_011900_020 Hb_006925_030--Hb_011900_020 Hb_006925_030--Hb_002686_060 Hb_073490_010 Hb_073490_010 Hb_006925_030--Hb_073490_010 Hb_189099_020 Hb_189099_020 Hb_088080_030--Hb_189099_020 Hb_000920_020 Hb_000920_020 Hb_088080_030--Hb_000920_020 Hb_003746_020 Hb_003746_020 Hb_088080_030--Hb_003746_020 Hb_062192_030 Hb_062192_030 Hb_088080_030--Hb_062192_030 Hb_072212_020 Hb_072212_020 Hb_088080_030--Hb_072212_020 Hb_041813_030 Hb_041813_030 Hb_088080_030--Hb_041813_030 Hb_003032_090--Hb_001338_150 Hb_003963_040 Hb_003963_040 Hb_003032_090--Hb_003963_040 Hb_185274_020 Hb_185274_020 Hb_003032_090--Hb_185274_020 Hb_000156_240 Hb_000156_240 Hb_003032_090--Hb_000156_240 Hb_001338_160 Hb_001338_160 Hb_003032_090--Hb_001338_160 Hb_002835_090 Hb_002835_090 Hb_003032_090--Hb_002835_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0453674 0.351921 0.336481 0.269292 0.240946 0.350632
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.249155 0.195864 0.116244 0.106345 6.31225

CAGE analysis