Hb_006925_030

Information

Type -
Description -
Location Contig6925: 76312-78066
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08940g
description POPTRDRAFT_751360; hypothetical protein
nr
ID XP_011029372.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
swissprot
ID O82380
description Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1
trembl
ID B9GKL9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08940g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006925_030 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
2 Hb_000699_080 0.1234856873 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
3 Hb_000359_070 0.1379764657 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
4 Hb_000360_010 0.1400253042 - - PREDICTED: ferredoxin-dependent glutamate synthase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_011900_020 0.1448342682 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
6 Hb_002686_060 0.1472245032 - - conserved hypothetical protein [Ricinus communis]
7 Hb_073490_010 0.1484773502 - - NAD(P)-linked oxidoreductase superfamily protein isoform 1 [Theobroma cacao]
8 Hb_159305_010 0.1510233395 - - rpl2 [Jatropha curcas]
9 Hb_012940_020 0.1512776949 - - zeaxanthin epoxidase, putative [Ricinus communis]
10 Hb_000120_900 0.1520713431 - - catalase [Hevea brasiliensis]
11 Hb_000667_140 0.1533811699 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
12 Hb_106552_030 0.1544210665 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
13 Hb_000038_020 0.1544273287 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
14 Hb_189099_020 0.1544305301 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
15 Hb_034168_010 0.154884639 - - hypothetical protein [Azospirillum sp. CAG:260]
16 Hb_003963_040 0.1551158492 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
17 Hb_185274_020 0.1571529178 - - Ycf2 (chloroplast) [Andrographis paniculata]
18 Hb_000012_440 0.1580572824 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
19 Hb_003032_090 0.1588615865 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
20 Hb_156850_020 0.1596617429 - - ATP-dependent zinc metalloprotease FTSH 1, chloroplastic [Glycine soja]

Gene co-expression network

sample Hb_006925_030 Hb_006925_030 Hb_000699_080 Hb_000699_080 Hb_006925_030--Hb_000699_080 Hb_000359_070 Hb_000359_070 Hb_006925_030--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_006925_030--Hb_000360_010 Hb_011900_020 Hb_011900_020 Hb_006925_030--Hb_011900_020 Hb_002686_060 Hb_002686_060 Hb_006925_030--Hb_002686_060 Hb_073490_010 Hb_073490_010 Hb_006925_030--Hb_073490_010 Hb_000699_080--Hb_002686_060 Hb_003336_020 Hb_003336_020 Hb_000699_080--Hb_003336_020 Hb_000038_020 Hb_000038_020 Hb_000699_080--Hb_000038_020 Hb_000120_900 Hb_000120_900 Hb_000699_080--Hb_000120_900 Hb_168031_020 Hb_168031_020 Hb_000699_080--Hb_168031_020 Hb_000359_070--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_000359_070--Hb_156850_020 Hb_001266_160 Hb_001266_160 Hb_000359_070--Hb_001266_160 Hb_012940_020 Hb_012940_020 Hb_000359_070--Hb_012940_020 Hb_000359_070--Hb_000038_020 Hb_028960_010 Hb_028960_010 Hb_000359_070--Hb_028960_010 Hb_000360_010--Hb_011900_020 Hb_000360_010--Hb_156850_020 Hb_003905_030 Hb_003905_030 Hb_000360_010--Hb_003905_030 Hb_106552_030 Hb_106552_030 Hb_000360_010--Hb_106552_030 Hb_000360_010--Hb_000359_070 Hb_010080_070 Hb_010080_070 Hb_000360_010--Hb_010080_070 Hb_011900_020--Hb_156850_020 Hb_006816_040 Hb_006816_040 Hb_011900_020--Hb_006816_040 Hb_011900_020--Hb_010080_070 Hb_002835_090 Hb_002835_090 Hb_011900_020--Hb_002835_090 Hb_002686_060--Hb_000038_020 Hb_002686_060--Hb_003336_020 Hb_000012_010 Hb_000012_010 Hb_002686_060--Hb_000012_010 Hb_002686_060--Hb_000359_070 Hb_002686_060--Hb_168031_020 Hb_159305_010 Hb_159305_010 Hb_073490_010--Hb_159305_010 Hb_003693_020 Hb_003693_020 Hb_073490_010--Hb_003693_020 Hb_019253_040 Hb_019253_040 Hb_073490_010--Hb_019253_040 Hb_073490_010--Hb_003336_020 Hb_000156_240 Hb_000156_240 Hb_073490_010--Hb_000156_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.908965 1.9715 7.98835 1.41813 0.74596 1.8412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09693 1.19184 1.94094 1.46535 50.5554

CAGE analysis