Hb_159305_010

Information

Type -
Description -
Location Contig159305: 103-2998
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00130
description rpl2; ribosomal protein L2
nr
ID YP_002720176.1
description rpl2 [Jatropha curcas]
swissprot
ID A0A377
description 50S ribosomal protein L2-A, chloroplastic OS=Coffea arabica GN=rpl2-A PE=3 SV=1
trembl
ID C0LED8
description 50S ribosomal protein L2, chloroplastic OS=Jatropha curcas GN=rpl2 PE=3 SV=1
Gene Ontology
ID GO:0005739
description ribosomal protein l2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14133: 72-1708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159305_010 0.0 - - rpl2 [Jatropha curcas]
2 Hb_073490_010 0.1123513122 - - NAD(P)-linked oxidoreductase superfamily protein isoform 1 [Theobroma cacao]
3 Hb_051924_010 0.1278204805 - - BnaA01g34100D [Brassica napus]
4 Hb_019253_040 0.1385077954 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006925_030 0.1510233395 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
6 Hb_189099_020 0.1536186941 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
7 Hb_003336_020 0.1604416406 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
8 Hb_159305_020 0.1610152337 - - 50S ribosomal protein L2-B [Medicago truncatula]
9 Hb_001338_080 0.1618870346 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
10 Hb_000156_240 0.1628796742 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
11 Hb_003693_020 0.1691799236 - - Ycf1, partial (chloroplast) [Clusia rosea]
12 Hb_000120_900 0.1731154618 - - catalase [Hevea brasiliensis]
13 Hb_001083_040 0.1751700107 - - hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]
14 Hb_000699_080 0.1754415903 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
15 Hb_088080_030 0.1778462149 - - ribosomal protein S4 [Hevea brasiliensis]
16 Hb_004811_010 0.1802487658 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
17 Hb_182972_020 0.1807050612 - - cytochrome b6 [Gossypium barbadense]
18 Hb_179142_010 0.1826783444 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
19 Hb_000012_440 0.1829313089 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
20 Hb_000920_020 0.1840167741 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]

Gene co-expression network

sample Hb_159305_010 Hb_159305_010 Hb_073490_010 Hb_073490_010 Hb_159305_010--Hb_073490_010 Hb_051924_010 Hb_051924_010 Hb_159305_010--Hb_051924_010 Hb_019253_040 Hb_019253_040 Hb_159305_010--Hb_019253_040 Hb_006925_030 Hb_006925_030 Hb_159305_010--Hb_006925_030 Hb_189099_020 Hb_189099_020 Hb_159305_010--Hb_189099_020 Hb_003336_020 Hb_003336_020 Hb_159305_010--Hb_003336_020 Hb_003693_020 Hb_003693_020 Hb_073490_010--Hb_003693_020 Hb_073490_010--Hb_006925_030 Hb_073490_010--Hb_019253_040 Hb_073490_010--Hb_003336_020 Hb_000156_240 Hb_000156_240 Hb_073490_010--Hb_000156_240 Hb_182972_020 Hb_182972_020 Hb_051924_010--Hb_182972_020 Hb_000627_200 Hb_000627_200 Hb_051924_010--Hb_000627_200 Hb_001338_080 Hb_001338_080 Hb_051924_010--Hb_001338_080 Hb_007645_060 Hb_007645_060 Hb_051924_010--Hb_007645_060 Hb_003693_030 Hb_003693_030 Hb_051924_010--Hb_003693_030 Hb_051924_010--Hb_019253_040 Hb_019253_040--Hb_007645_060 Hb_019253_040--Hb_182972_020 Hb_004811_010 Hb_004811_010 Hb_019253_040--Hb_004811_010 Hb_151890_020 Hb_151890_020 Hb_019253_040--Hb_151890_020 Hb_019253_040--Hb_001338_080 Hb_000699_080 Hb_000699_080 Hb_006925_030--Hb_000699_080 Hb_000359_070 Hb_000359_070 Hb_006925_030--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_006925_030--Hb_000360_010 Hb_011900_020 Hb_011900_020 Hb_006925_030--Hb_011900_020 Hb_002686_060 Hb_002686_060 Hb_006925_030--Hb_002686_060 Hb_088080_030 Hb_088080_030 Hb_189099_020--Hb_088080_030 Hb_062192_030 Hb_062192_030 Hb_189099_020--Hb_062192_030 Hb_034168_010 Hb_034168_010 Hb_189099_020--Hb_034168_010 Hb_000920_020 Hb_000920_020 Hb_189099_020--Hb_000920_020 Hb_041813_030 Hb_041813_030 Hb_189099_020--Hb_041813_030 Hb_189099_020--Hb_001338_080 Hb_012940_020 Hb_012940_020 Hb_003336_020--Hb_012940_020 Hb_028960_010 Hb_028960_010 Hb_003336_020--Hb_028960_010 Hb_003336_020--Hb_000699_080 Hb_003336_020--Hb_000359_070 Hb_003336_020--Hb_002686_060 Hb_156850_020 Hb_156850_020 Hb_003336_020--Hb_156850_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.985043 0.68964 10.5651 2.54167 0.704725 2.62645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.13155 2.96986 4.70862 0.559733 132.665

CAGE analysis