Hb_003693_030

Information

Type -
Description -
Location Contig3693: 67387-70111
Sequence    

Annotation

kegg
ID rcu:RCOM_ORF00112
description ndhH; NADH dehydrogenase subunit 7
nr
ID YP_004327717.1
description NADH dehydrogenase subunit 7 [Hevea brasiliensis]
swissprot
ID B1NWK5
description NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Manihot esculenta GN=ndhH PE=3 SV=1
trembl
ID F2X0H1
description NAD(P)H-quinone oxidoreductase subunit H, chloroplastic OS=Hevea brasiliensis GN=ndhH PE=3 SV=1
Gene Ontology
ID GO:0005886
description nadh dehydrogenase subunit 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003693_030 0.0 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
2 Hb_000627_200 0.1011511277 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
3 Hb_051924_010 0.1087552142 - - BnaA01g34100D [Brassica napus]
4 Hb_182972_020 0.1096225768 - - cytochrome b6 [Gossypium barbadense]
5 Hb_001338_150 0.1167598703 - - hypothetical chloroplast RF1 [Dillenia indica]
6 Hb_001645_020 0.1224225904 - - NAD(P)H-quinone oxidoreductase subunit H [Medicago truncatula]
7 Hb_001338_080 0.1260190787 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
8 Hb_141708_010 0.1370111005 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
9 Hb_001674_050 0.143535403 - - cytochrome b6 (chloroplast) [Apios americana]
10 Hb_007645_060 0.1444571258 - - cytochrome f [Hevea brasiliensis]
11 Hb_179142_010 0.1457203216 - - NADH dehydrogenase ND 2 subunit [Nicotiana tomentosiformis]
12 Hb_031194_010 0.1467060479 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Arachis hypogaea]
13 Hb_088080_040 0.1523040998 - - NAD(P)H-quinone oxidoreductase subunit 2 A [Medicago truncatula]
14 Hb_019253_040 0.1553567046 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001338_170 0.1576542745 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
16 Hb_000156_240 0.1584981295 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
17 Hb_003032_090 0.1591695221 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
18 Hb_000648_150 0.1596193355 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
19 Hb_185274_020 0.1617347564 - - Ycf2 (chloroplast) [Andrographis paniculata]
20 Hb_151890_020 0.165634307 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]

Gene co-expression network

sample Hb_003693_030 Hb_003693_030 Hb_000627_200 Hb_000627_200 Hb_003693_030--Hb_000627_200 Hb_051924_010 Hb_051924_010 Hb_003693_030--Hb_051924_010 Hb_182972_020 Hb_182972_020 Hb_003693_030--Hb_182972_020 Hb_001338_150 Hb_001338_150 Hb_003693_030--Hb_001338_150 Hb_001645_020 Hb_001645_020 Hb_003693_030--Hb_001645_020 Hb_001338_080 Hb_001338_080 Hb_003693_030--Hb_001338_080 Hb_000627_200--Hb_182972_020 Hb_007645_060 Hb_007645_060 Hb_000627_200--Hb_007645_060 Hb_000627_200--Hb_001645_020 Hb_001338_170 Hb_001338_170 Hb_000627_200--Hb_001338_170 Hb_000627_200--Hb_051924_010 Hb_051924_010--Hb_182972_020 Hb_051924_010--Hb_001338_080 Hb_051924_010--Hb_007645_060 Hb_019253_040 Hb_019253_040 Hb_051924_010--Hb_019253_040 Hb_182972_020--Hb_007645_060 Hb_182972_020--Hb_001645_020 Hb_151890_020 Hb_151890_020 Hb_182972_020--Hb_151890_020 Hb_007645_050 Hb_007645_050 Hb_182972_020--Hb_007645_050 Hb_003032_090 Hb_003032_090 Hb_001338_150--Hb_003032_090 Hb_003963_040 Hb_003963_040 Hb_001338_150--Hb_003963_040 Hb_001338_160 Hb_001338_160 Hb_001338_150--Hb_001338_160 Hb_003693_020 Hb_003693_020 Hb_001338_150--Hb_003693_020 Hb_000156_240 Hb_000156_240 Hb_001338_150--Hb_000156_240 Hb_001645_020--Hb_007645_060 Hb_031194_010 Hb_031194_010 Hb_001645_020--Hb_031194_010 Hb_004811_010 Hb_004811_010 Hb_001645_020--Hb_004811_010 Hb_141708_010 Hb_141708_010 Hb_001338_080--Hb_141708_010 Hb_001674_050 Hb_001674_050 Hb_001338_080--Hb_001674_050 Hb_001338_080--Hb_182972_020 Hb_001338_080--Hb_019253_040 Hb_001338_080--Hb_007645_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.280119 0.0426062 0.581875 0.280234 0.147822 0.722077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0209522 0.079118 0.0500917 10.8851

CAGE analysis