Hb_073490_010

Information

Type -
Description -
Location Contig73490: 441-2135
Sequence    

Annotation

kegg
ID tcc:TCM_041465
description NAD(P)-linked oxidoreductase superfamily protein isoform 1
nr
ID XP_007015874.1
description NAD(P)-linked oxidoreductase superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID F6HHH7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g00030 PE=4 SV=1
Gene Ontology
ID GO:0009507
description aryl-alcohol dehydrogenase isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_073490_010 0.0 - - NAD(P)-linked oxidoreductase superfamily protein isoform 1 [Theobroma cacao]
2 Hb_159305_010 0.1123513122 - - rpl2 [Jatropha curcas]
3 Hb_003693_020 0.1433813876 - - Ycf1, partial (chloroplast) [Clusia rosea]
4 Hb_006925_030 0.1484773502 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
5 Hb_019253_040 0.1548380471 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003336_020 0.157008121 - - PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic [Vitis vinifera]
7 Hb_000156_240 0.1584095327 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
8 Hb_003362_050 0.1608300898 - - PREDICTED: probable sucrose-phosphate synthase 3 [Jatropha curcas]
9 Hb_002027_420 0.161341096 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
10 Hb_000103_240 0.1624248797 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Jatropha curcas]
11 Hb_004542_030 0.1734063222 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
12 Hb_103465_010 0.1745080126 - - RNA polymerase beta subunit [Hevea brasiliensis]
13 Hb_012940_020 0.1777374408 - - zeaxanthin epoxidase, putative [Ricinus communis]
14 Hb_106552_030 0.1787107614 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
15 Hb_004811_010 0.1789130397 - - DNA-directed RNA polymerase subunit beta, partial [Medicago truncatula]
16 Hb_001083_040 0.1794906641 - - hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]
17 Hb_000699_080 0.1803942913 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
18 Hb_004010_080 0.1835492599 - - alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_084849_030 0.1849113723 - - PREDICTED: uncharacterized protein LOC105634080 isoform X1 [Jatropha curcas]
20 Hb_051924_010 0.1874019083 - - BnaA01g34100D [Brassica napus]

Gene co-expression network

sample Hb_073490_010 Hb_073490_010 Hb_159305_010 Hb_159305_010 Hb_073490_010--Hb_159305_010 Hb_003693_020 Hb_003693_020 Hb_073490_010--Hb_003693_020 Hb_006925_030 Hb_006925_030 Hb_073490_010--Hb_006925_030 Hb_019253_040 Hb_019253_040 Hb_073490_010--Hb_019253_040 Hb_003336_020 Hb_003336_020 Hb_073490_010--Hb_003336_020 Hb_000156_240 Hb_000156_240 Hb_073490_010--Hb_000156_240 Hb_051924_010 Hb_051924_010 Hb_159305_010--Hb_051924_010 Hb_159305_010--Hb_019253_040 Hb_159305_010--Hb_006925_030 Hb_189099_020 Hb_189099_020 Hb_159305_010--Hb_189099_020 Hb_159305_010--Hb_003336_020 Hb_003693_020--Hb_000156_240 Hb_031194_010 Hb_031194_010 Hb_003693_020--Hb_031194_010 Hb_002027_420 Hb_002027_420 Hb_003693_020--Hb_002027_420 Hb_003963_040 Hb_003963_040 Hb_003693_020--Hb_003963_040 Hb_003693_020--Hb_019253_040 Hb_004542_030 Hb_004542_030 Hb_003693_020--Hb_004542_030 Hb_000699_080 Hb_000699_080 Hb_006925_030--Hb_000699_080 Hb_000359_070 Hb_000359_070 Hb_006925_030--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_006925_030--Hb_000360_010 Hb_011900_020 Hb_011900_020 Hb_006925_030--Hb_011900_020 Hb_002686_060 Hb_002686_060 Hb_006925_030--Hb_002686_060 Hb_007645_060 Hb_007645_060 Hb_019253_040--Hb_007645_060 Hb_182972_020 Hb_182972_020 Hb_019253_040--Hb_182972_020 Hb_004811_010 Hb_004811_010 Hb_019253_040--Hb_004811_010 Hb_019253_040--Hb_051924_010 Hb_151890_020 Hb_151890_020 Hb_019253_040--Hb_151890_020 Hb_001338_080 Hb_001338_080 Hb_019253_040--Hb_001338_080 Hb_012940_020 Hb_012940_020 Hb_003336_020--Hb_012940_020 Hb_028960_010 Hb_028960_010 Hb_003336_020--Hb_028960_010 Hb_003336_020--Hb_000699_080 Hb_003336_020--Hb_000359_070 Hb_003336_020--Hb_002686_060 Hb_156850_020 Hb_156850_020 Hb_003336_020--Hb_156850_020 Hb_103465_010 Hb_103465_010 Hb_000156_240--Hb_103465_010 Hb_001083_040 Hb_001083_040 Hb_000156_240--Hb_001083_040 Hb_000156_240--Hb_004542_030 Hb_000156_240--Hb_002027_420 Hb_000156_240--Hb_031194_010 Hb_000156_240--Hb_004811_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.069797 0.0708487 1.75424 0.227537 0.102905 0.0913039
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.241754 0.506808 0.226153 0.0515453 11.1551

CAGE analysis