Hb_000012_010

Information

Type -
Description -
Location Contig12: 35205-45355
Sequence    

Annotation

kegg
ID rcu:RCOM_0798990
description RNA polymerase sigma factor rpoD, putative
nr
ID KDP34138.1
description hypothetical protein JCGZ_07709 [Jatropha curcas]
swissprot
ID O24621
description RNA polymerase sigma factor sigC OS=Arabidopsis thaliana GN=SIGC PE=2 SV=1
trembl
ID A0A067KGK9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07709 PE=4 SV=1
Gene Ontology
ID GO:0003677
description rna polymerase sigma factor sigc

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05971: 35305-45367 , PASA_asmbl_05972: 35304-44464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_010 0.0 - - hypothetical protein JCGZ_07709 [Jatropha curcas]
2 Hb_002304_180 0.1146836611 - - PREDICTED: magnesium-chelatase subunit ChlI, chloroplastic [Jatropha curcas]
3 Hb_011053_020 0.1186790858 - - lipoic acid synthetase, putative [Ricinus communis]
4 Hb_000189_520 0.1272043553 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
5 Hb_000023_210 0.1338990046 - - PREDICTED: protein TIC 55, chloroplastic [Jatropha curcas]
6 Hb_000667_140 0.1381965131 - - PREDICTED: uridine kinase-like protein 3 isoform X1 [Jatropha curcas]
7 Hb_000866_050 0.1388172584 - - phosphate transporter [Manihot esculenta]
8 Hb_007044_250 0.1394038516 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002686_060 0.1412526934 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000977_270 0.1439385315 - - PREDICTED: phosphoglycolate phosphatase 1B, chloroplastic [Jatropha curcas]
11 Hb_001484_080 0.1440522302 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
12 Hb_001792_030 0.1494552234 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
13 Hb_000890_110 0.1521731366 - - PREDICTED: GTP-binding protein OBGC, chloroplastic [Populus euphratica]
14 Hb_000038_020 0.1556404696 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
15 Hb_001266_160 0.1570481632 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
16 Hb_158144_020 0.1578963904 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
17 Hb_183963_010 0.1589304907 - - core region of GTP cyclohydrolase I family protein [Populus trichocarpa]
18 Hb_007002_010 0.1590029227 - - PREDICTED: dnaJ protein ERDJ3B [Jatropha curcas]
19 Hb_036790_120 0.1605655203 - - PREDICTED: uncharacterized protein LOC105645122 isoform X1 [Jatropha curcas]
20 Hb_002894_090 0.162373753 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_000012_010 Hb_000012_010 Hb_002304_180 Hb_002304_180 Hb_000012_010--Hb_002304_180 Hb_011053_020 Hb_011053_020 Hb_000012_010--Hb_011053_020 Hb_000189_520 Hb_000189_520 Hb_000012_010--Hb_000189_520 Hb_000023_210 Hb_000023_210 Hb_000012_010--Hb_000023_210 Hb_000667_140 Hb_000667_140 Hb_000012_010--Hb_000667_140 Hb_000866_050 Hb_000866_050 Hb_000012_010--Hb_000866_050 Hb_003494_030 Hb_003494_030 Hb_002304_180--Hb_003494_030 Hb_002304_180--Hb_000667_140 Hb_000977_270 Hb_000977_270 Hb_002304_180--Hb_000977_270 Hb_002304_180--Hb_000023_210 Hb_007044_250 Hb_007044_250 Hb_002304_180--Hb_007044_250 Hb_000402_170 Hb_000402_170 Hb_002304_180--Hb_000402_170 Hb_183963_010 Hb_183963_010 Hb_011053_020--Hb_183963_010 Hb_007002_010 Hb_007002_010 Hb_011053_020--Hb_007002_010 Hb_011053_020--Hb_000023_210 Hb_011053_020--Hb_000866_050 Hb_011053_020--Hb_000189_520 Hb_001792_030 Hb_001792_030 Hb_000189_520--Hb_001792_030 Hb_000189_520--Hb_000866_050 Hb_000032_400 Hb_000032_400 Hb_000189_520--Hb_000032_400 Hb_001621_060 Hb_001621_060 Hb_000189_520--Hb_001621_060 Hb_003935_080 Hb_003935_080 Hb_000189_520--Hb_003935_080 Hb_011053_030 Hb_011053_030 Hb_000189_520--Hb_011053_030 Hb_000023_210--Hb_000402_170 Hb_000300_020 Hb_000300_020 Hb_000023_210--Hb_000300_020 Hb_000023_210--Hb_007002_010 Hb_000684_280 Hb_000684_280 Hb_000023_210--Hb_000684_280 Hb_000038_020 Hb_000038_020 Hb_000667_140--Hb_000038_020 Hb_003427_080 Hb_003427_080 Hb_000667_140--Hb_003427_080 Hb_000667_140--Hb_003494_030 Hb_001266_160 Hb_001266_160 Hb_000667_140--Hb_001266_160 Hb_000359_070 Hb_000359_070 Hb_000667_140--Hb_000359_070 Hb_000058_080 Hb_000058_080 Hb_000866_050--Hb_000058_080 Hb_000866_050--Hb_003935_080 Hb_000866_050--Hb_011053_030 Hb_000866_050--Hb_183963_010 Hb_000107_590 Hb_000107_590 Hb_000866_050--Hb_000107_590
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.68314 1.12863 9.59123 7.63201 0.28638 2.22217
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.63737 3.56976 6.3098 2.88763 43.303

CAGE analysis