Hb_032733_010

Information

Type -
Description -
Location Contig32733: 1938-4011
Sequence    

Annotation

kegg
ID pop:POPTR_0025s00320g
description hypothetical protein
nr
ID KDP46608.1
description hypothetical protein JCGZ_04542 [Jatropha curcas]
swissprot
ID Q9ZPS9
description Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1
trembl
ID A0A067LGY2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04542 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032733_010 0.0 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
2 Hb_003032_090 0.1600642599 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
3 Hb_006816_040 0.178635966 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
4 Hb_002835_090 0.1881905128 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
5 Hb_004611_040 0.1908773087 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000038_020 0.1916708593 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Jatropha curcas]
7 Hb_001155_020 0.1990282119 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
8 Hb_003427_080 0.1998500252 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
9 Hb_011900_020 0.2011529624 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Jatropha curcas]
10 Hb_001153_130 0.201163045 - - unnamed protein product [Vitis vinifera]
11 Hb_005332_150 0.2013825233 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46610 [Jatropha curcas]
12 Hb_006925_030 0.202524015 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
13 Hb_001338_160 0.2039591984 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
14 Hb_003963_040 0.2047790049 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
15 Hb_001338_150 0.2052438132 - - hypothetical chloroplast RF1 [Dillenia indica]
16 Hb_000053_120 0.209974374 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
17 Hb_072212_010 0.2129448852 - - hypothetical chloroplast RF1 [Ficus sp. M. J. Moore 315]
18 Hb_005656_150 0.2135498273 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
19 Hb_168031_020 0.2161860334 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
20 Hb_162094_010 0.2184709453 - - RNA polymerase alpha subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_032733_010 Hb_032733_010 Hb_003032_090 Hb_003032_090 Hb_032733_010--Hb_003032_090 Hb_006816_040 Hb_006816_040 Hb_032733_010--Hb_006816_040 Hb_002835_090 Hb_002835_090 Hb_032733_010--Hb_002835_090 Hb_004611_040 Hb_004611_040 Hb_032733_010--Hb_004611_040 Hb_000038_020 Hb_000038_020 Hb_032733_010--Hb_000038_020 Hb_001155_020 Hb_001155_020 Hb_032733_010--Hb_001155_020 Hb_001338_150 Hb_001338_150 Hb_003032_090--Hb_001338_150 Hb_003963_040 Hb_003963_040 Hb_003032_090--Hb_003963_040 Hb_185274_020 Hb_185274_020 Hb_003032_090--Hb_185274_020 Hb_000156_240 Hb_000156_240 Hb_003032_090--Hb_000156_240 Hb_001338_160 Hb_001338_160 Hb_003032_090--Hb_001338_160 Hb_003032_090--Hb_002835_090 Hb_011900_020 Hb_011900_020 Hb_006816_040--Hb_011900_020 Hb_156850_020 Hb_156850_020 Hb_006816_040--Hb_156850_020 Hb_000359_070 Hb_000359_070 Hb_006816_040--Hb_000359_070 Hb_000360_010 Hb_000360_010 Hb_006816_040--Hb_000360_010 Hb_012940_020 Hb_012940_020 Hb_006816_040--Hb_012940_020 Hb_007595_050 Hb_007595_050 Hb_006816_040--Hb_007595_050 Hb_001377_060 Hb_001377_060 Hb_002835_090--Hb_001377_060 Hb_000029_330 Hb_000029_330 Hb_002835_090--Hb_000029_330 Hb_002835_090--Hb_011900_020 Hb_002835_090--Hb_000359_070 Hb_002835_090--Hb_007595_050 Hb_000069_370 Hb_000069_370 Hb_002835_090--Hb_000069_370 Hb_003427_080 Hb_003427_080 Hb_004611_040--Hb_003427_080 Hb_004611_040--Hb_002835_090 Hb_004611_040--Hb_001155_020 Hb_000667_140 Hb_000667_140 Hb_004611_040--Hb_000667_140 Hb_000402_170 Hb_000402_170 Hb_004611_040--Hb_000402_170 Hb_004611_040--Hb_001338_160 Hb_000038_020--Hb_000667_140 Hb_168031_020 Hb_168031_020 Hb_000038_020--Hb_168031_020 Hb_000038_020--Hb_000359_070 Hb_005332_150 Hb_005332_150 Hb_000038_020--Hb_005332_150 Hb_000038_020--Hb_003427_080 Hb_000038_020--Hb_000069_370 Hb_001155_020--Hb_001338_160 Hb_072212_010 Hb_072212_010 Hb_001155_020--Hb_072212_010 Hb_001155_020--Hb_003963_040 Hb_001155_020--Hb_002835_090 Hb_001155_020--Hb_001338_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0572506 0.0692689 0.226931 0.0824183 0.205704 0.0591519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0241792 0.0909036 0.0385982 1.41717

CAGE analysis