Hb_005656_150

Information

Type -
Description -
Location Contig5656: 105663-111257
Sequence    

Annotation

kegg
ID tcc:TCM_011635
description 26S proteasome non-ATPase regulatory subunit 11
nr
ID XP_007045996.1
description 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
swissprot
ID Q9LP45
description 26S proteasome non-ATPase regulatory subunit 11 homolog OS=Arabidopsis thaliana GN=RPN6 PE=1 SV=1
trembl
ID A0A061EB23
description 26S proteasome non-ATPase regulatory subunit 11 OS=Theobroma cacao GN=TCM_011635 PE=4 SV=1
Gene Ontology
ID GO:0044424
description 26s proteasome non-atpase regulatory subunit 11 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49023: 106250-106469 , PASA_asmbl_49024: 107056-107393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005656_150 0.0 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
2 Hb_000012_440 0.1448398606 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
3 Hb_003032_090 0.1799171308 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
4 Hb_004987_030 0.1971785849 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
5 Hb_001338_150 0.212133544 - - hypothetical chloroplast RF1 [Dillenia indica]
6 Hb_032733_010 0.2135498273 - - hypothetical protein JCGZ_04542 [Jatropha curcas]
7 Hb_008092_080 0.2162114586 - - elongation factor ts, putative [Ricinus communis]
8 Hb_001902_170 0.2165656344 - - PREDICTED: putative glucan endo-1,3-beta-glucosidase GVI [Nicotiana sylvestris]
9 Hb_007313_060 0.2231577036 - - PREDICTED: paramyosin [Jatropha curcas]
10 Hb_006040_160 0.2237160634 - - ribosomal protein S12 (mitochondrion) [Hevea brasiliensis]
11 Hb_062273_010 0.2326313356 - - ATP synthase F0 subunit 9 [Chara vulgaris]
12 Hb_072212_020 0.2332479604 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
13 Hb_003693_030 0.234800457 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
14 Hb_104735_020 0.2372660104 - - ATPase subunit 4 (mitochondrion) [Hevea brasiliensis]
15 Hb_062192_030 0.2375197891 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
16 Hb_006816_040 0.2381028359 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Jatropha curcas]
17 Hb_185274_020 0.2404776034 - - Ycf2 (chloroplast) [Andrographis paniculata]
18 Hb_189099_020 0.2407388512 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
19 Hb_004459_070 0.2461885647 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
20 Hb_007810_070 0.2472009552 - - hypothetical protein VITISV_027174 [Vitis vinifera]

Gene co-expression network

sample Hb_005656_150 Hb_005656_150 Hb_000012_440 Hb_000012_440 Hb_005656_150--Hb_000012_440 Hb_003032_090 Hb_003032_090 Hb_005656_150--Hb_003032_090 Hb_004987_030 Hb_004987_030 Hb_005656_150--Hb_004987_030 Hb_001338_150 Hb_001338_150 Hb_005656_150--Hb_001338_150 Hb_032733_010 Hb_032733_010 Hb_005656_150--Hb_032733_010 Hb_008092_080 Hb_008092_080 Hb_005656_150--Hb_008092_080 Hb_000012_440--Hb_004987_030 Hb_000699_080 Hb_000699_080 Hb_000012_440--Hb_000699_080 Hb_006925_030 Hb_006925_030 Hb_000012_440--Hb_006925_030 Hb_088080_030 Hb_088080_030 Hb_000012_440--Hb_088080_030 Hb_000012_440--Hb_003032_090 Hb_003032_090--Hb_001338_150 Hb_003963_040 Hb_003963_040 Hb_003032_090--Hb_003963_040 Hb_185274_020 Hb_185274_020 Hb_003032_090--Hb_185274_020 Hb_000156_240 Hb_000156_240 Hb_003032_090--Hb_000156_240 Hb_001338_160 Hb_001338_160 Hb_003032_090--Hb_001338_160 Hb_002835_090 Hb_002835_090 Hb_003032_090--Hb_002835_090 Hb_004987_030--Hb_000699_080 Hb_004987_030--Hb_006925_030 Hb_004987_030--Hb_088080_030 Hb_000120_900 Hb_000120_900 Hb_004987_030--Hb_000120_900 Hb_159305_010 Hb_159305_010 Hb_004987_030--Hb_159305_010 Hb_001338_150--Hb_003963_040 Hb_003693_030 Hb_003693_030 Hb_001338_150--Hb_003693_030 Hb_001338_150--Hb_001338_160 Hb_003693_020 Hb_003693_020 Hb_001338_150--Hb_003693_020 Hb_001338_150--Hb_000156_240 Hb_032733_010--Hb_003032_090 Hb_006816_040 Hb_006816_040 Hb_032733_010--Hb_006816_040 Hb_032733_010--Hb_002835_090 Hb_004611_040 Hb_004611_040 Hb_032733_010--Hb_004611_040 Hb_000038_020 Hb_000038_020 Hb_032733_010--Hb_000038_020 Hb_001155_020 Hb_001155_020 Hb_032733_010--Hb_001155_020 Hb_090530_010 Hb_090530_010 Hb_008092_080--Hb_090530_010 Hb_024714_080 Hb_024714_080 Hb_008092_080--Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_008092_080--Hb_003077_130 Hb_002681_080 Hb_002681_080 Hb_008092_080--Hb_002681_080 Hb_000069_490 Hb_000069_490 Hb_008092_080--Hb_000069_490 Hb_003427_080 Hb_003427_080 Hb_008092_080--Hb_003427_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46865 3.46837 1.31672 2.48031 5.10534 3.88621
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.06034 0.504066 0.857426 0.394092 48.8464

CAGE analysis