Hb_001115_060

Information

Type -
Description -
Location Contig1115: 95356-98114
Sequence    

Annotation

kegg
ID mdm:103402316
description uncharacterized LOC103402316
nr
ID XP_010264786.1
description PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A5AKJ7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035217 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001115_060 0.0 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
2 Hb_000668_030 0.0004815603 - - -
3 Hb_002281_060 0.0009120862 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
4 Hb_000789_210 0.0022334521 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
5 Hb_010523_020 0.0031700493 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_003898_010 0.0037741484 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_004984_090 0.007117416 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
8 Hb_001623_450 0.0098550195 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
9 Hb_000199_050 0.0100802519 - - Gibberellin 20 oxidase, putative [Ricinus communis]
10 Hb_001385_020 0.0250827394 - - hypothetical protein POPTR_0001s39010g [Populus trichocarpa]
11 Hb_000288_050 0.0255626365 - - conserved hypothetical protein [Ricinus communis]
12 Hb_133913_010 0.0258665431 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
13 Hb_005300_050 0.0292134861 - - hypothetical protein VITISV_001308 [Vitis vinifera]
14 Hb_003908_010 0.0295056462 - - polyprotein [Oryza australiensis]
15 Hb_000051_100 0.0300092319 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
16 Hb_001255_070 0.0302791968 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_000917_020 0.0309411508 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_007524_040 0.0311169911 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
19 Hb_005352_020 0.0362368828 - - -
20 Hb_001348_240 0.040191834 - - Putative polyprotein, identical [Solanum demissum]

Gene co-expression network

sample Hb_001115_060 Hb_001115_060 Hb_000668_030 Hb_000668_030 Hb_001115_060--Hb_000668_030 Hb_002281_060 Hb_002281_060 Hb_001115_060--Hb_002281_060 Hb_000789_210 Hb_000789_210 Hb_001115_060--Hb_000789_210 Hb_010523_020 Hb_010523_020 Hb_001115_060--Hb_010523_020 Hb_003898_010 Hb_003898_010 Hb_001115_060--Hb_003898_010 Hb_004984_090 Hb_004984_090 Hb_001115_060--Hb_004984_090 Hb_000668_030--Hb_002281_060 Hb_000668_030--Hb_000789_210 Hb_000668_030--Hb_010523_020 Hb_000668_030--Hb_003898_010 Hb_000668_030--Hb_004984_090 Hb_002281_060--Hb_010523_020 Hb_002281_060--Hb_003898_010 Hb_002281_060--Hb_000789_210 Hb_002281_060--Hb_004984_090 Hb_000789_210--Hb_004984_090 Hb_000789_210--Hb_010523_020 Hb_000789_210--Hb_003898_010 Hb_010523_020--Hb_003898_010 Hb_010523_020--Hb_004984_090 Hb_003898_010--Hb_004984_090 Hb_001623_450 Hb_001623_450 Hb_004984_090--Hb_001623_450 Hb_000199_050 Hb_000199_050 Hb_004984_090--Hb_000199_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0110701 0.172997

CAGE analysis