Hb_000199_050

Information

Type -
Description -
Location Contig199: 152617-153655
Sequence    

Annotation

kegg
ID rcu:RCOM_0896630
description Gibberellin 20 oxidase, putative (EC:1.14.11.15)
nr
ID XP_002517547.1
description Gibberellin 20 oxidase, putative [Ricinus communis]
swissprot
ID Q944Z5
description Probable 2-oxoglutarate-dependent dioxygenase AOP1 (Fragment) OS=Arabidopsis thaliana GN=AOP1 PE=2 SV=1
trembl
ID B9RUX8
description Gibberellin 20 oxidase, putative OS=Ricinus communis GN=RCOM_0896630 PE=3 SV=1
Gene Ontology
ID GO:0005737
description probable 2-oxoglutarate-dependent dioxygenase aop1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000199_050 0.0 - - Gibberellin 20 oxidase, putative [Ricinus communis]
2 Hb_001623_450 0.0002252895 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
3 Hb_004984_090 0.0029633827 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
4 Hb_000789_210 0.0078472613 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
5 Hb_000668_030 0.0095988141 - - -
6 Hb_001115_060 0.0100802519 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
7 Hb_002281_060 0.0109920714 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
8 Hb_010523_020 0.0132491757 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_003898_010 0.0138529966 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_001385_020 0.0150117088 - - hypothetical protein POPTR_0001s39010g [Populus trichocarpa]
11 Hb_000288_050 0.0154920685 - - conserved hypothetical protein [Ricinus communis]
12 Hb_133913_010 0.0157962731 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
13 Hb_001348_240 0.0301398826 - - Putative polyprotein, identical [Solanum demissum]
14 Hb_002396_010 0.0302986023 - - PREDICTED: uncharacterized protein LOC105767002 [Gossypium raimondii]
15 Hb_174010_030 0.0306304321 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
16 Hb_004145_030 0.0308235702 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
17 Hb_006599_040 0.0308864166 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_000777_010 0.0313728289 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
19 Hb_000905_010 0.0316382004 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
20 Hb_001782_090 0.0321030916 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]

Gene co-expression network

sample Hb_000199_050 Hb_000199_050 Hb_001623_450 Hb_001623_450 Hb_000199_050--Hb_001623_450 Hb_004984_090 Hb_004984_090 Hb_000199_050--Hb_004984_090 Hb_000789_210 Hb_000789_210 Hb_000199_050--Hb_000789_210 Hb_000668_030 Hb_000668_030 Hb_000199_050--Hb_000668_030 Hb_001115_060 Hb_001115_060 Hb_000199_050--Hb_001115_060 Hb_002281_060 Hb_002281_060 Hb_000199_050--Hb_002281_060 Hb_001623_450--Hb_004984_090 Hb_001623_450--Hb_000789_210 Hb_001623_450--Hb_000668_030 Hb_001623_450--Hb_001115_060 Hb_001623_450--Hb_002281_060 Hb_004984_090--Hb_000789_210 Hb_004984_090--Hb_000668_030 Hb_004984_090--Hb_001115_060 Hb_004984_090--Hb_002281_060 Hb_000789_210--Hb_000668_030 Hb_000789_210--Hb_001115_060 Hb_000789_210--Hb_002281_060 Hb_010523_020 Hb_010523_020 Hb_000789_210--Hb_010523_020 Hb_003898_010 Hb_003898_010 Hb_000789_210--Hb_003898_010 Hb_000668_030--Hb_001115_060 Hb_000668_030--Hb_002281_060 Hb_000668_030--Hb_010523_020 Hb_000668_030--Hb_003898_010 Hb_001115_060--Hb_002281_060 Hb_001115_060--Hb_010523_020 Hb_001115_060--Hb_003898_010 Hb_002281_060--Hb_010523_020 Hb_002281_060--Hb_003898_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0322949 0.457697

CAGE analysis