Hb_003898_010

Information

Type -
Description -
Location Contig3898: 46918-51238
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_007220718.1
description hypothetical protein PRUPE_ppa022673mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003898_010 0.0 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
2 Hb_010523_020 0.0006041192 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_002281_060 0.0028620894 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
4 Hb_001115_060 0.0037741484 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
5 Hb_000668_030 0.0042556874 - - -
6 Hb_000789_210 0.0060074621 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
7 Hb_004984_090 0.0108907776 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
8 Hb_001623_450 0.0136278168 - - PREDICTED: uncharacterized protein LOC102611758 [Citrus sinensis]
9 Hb_000199_050 0.0138529966 - - Gibberellin 20 oxidase, putative [Ricinus communis]
10 Hb_005300_050 0.0254478546 - - hypothetical protein VITISV_001308 [Vitis vinifera]
11 Hb_003908_010 0.0257402073 - - polyprotein [Oryza australiensis]
12 Hb_001255_070 0.0265142792 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_000917_020 0.0271766924 - - polyprotein [Citrus endogenous pararetrovirus]
14 Hb_007524_040 0.0273526568 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
15 Hb_001385_020 0.0288499588 - - hypothetical protein POPTR_0001s39010g [Populus trichocarpa]
16 Hb_000288_050 0.029329617 - - conserved hypothetical protein [Ricinus communis]
17 Hb_133913_010 0.0296333704 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
18 Hb_000051_100 0.0297702153 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
19 Hb_005352_020 0.0324765427 - - -
20 Hb_049490_010 0.0395399901 - - hypothetical protein VITISV_013805 [Vitis vinifera]

Gene co-expression network

sample Hb_003898_010 Hb_003898_010 Hb_010523_020 Hb_010523_020 Hb_003898_010--Hb_010523_020 Hb_002281_060 Hb_002281_060 Hb_003898_010--Hb_002281_060 Hb_001115_060 Hb_001115_060 Hb_003898_010--Hb_001115_060 Hb_000668_030 Hb_000668_030 Hb_003898_010--Hb_000668_030 Hb_000789_210 Hb_000789_210 Hb_003898_010--Hb_000789_210 Hb_004984_090 Hb_004984_090 Hb_003898_010--Hb_004984_090 Hb_010523_020--Hb_002281_060 Hb_010523_020--Hb_001115_060 Hb_010523_020--Hb_000668_030 Hb_010523_020--Hb_000789_210 Hb_010523_020--Hb_004984_090 Hb_002281_060--Hb_001115_060 Hb_002281_060--Hb_000668_030 Hb_002281_060--Hb_000789_210 Hb_002281_060--Hb_004984_090 Hb_001115_060--Hb_000668_030 Hb_001115_060--Hb_000789_210 Hb_001115_060--Hb_004984_090 Hb_000668_030--Hb_000789_210 Hb_000668_030--Hb_004984_090 Hb_000789_210--Hb_004984_090 Hb_001623_450 Hb_001623_450 Hb_004984_090--Hb_001623_450 Hb_000199_050 Hb_000199_050 Hb_004984_090--Hb_000199_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00342245 0.0555385

CAGE analysis