Hb_180367_010

Information

Type -
Description -
Location Contig180367: 8-1207
Sequence    

Annotation

kegg
ID cmo:103497647
description uncharacterized LOC103497647
nr
ID XP_012478546.1
description PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_180367_010 0.0 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
2 Hb_003567_020 0.0406665972 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003739_040 0.081760046 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
4 Hb_017415_010 0.0899099322 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
5 Hb_003157_020 0.1448462197 - - PREDICTED: uncharacterized protein LOC104809111 [Tarenaya hassleriana]
6 Hb_002149_030 0.1601131406 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
7 Hb_164415_010 0.1620465435 - - conserved hypothetical protein [Ricinus communis]
8 Hb_121041_010 0.1667515977 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
9 Hb_000051_100 0.1704297209 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
10 Hb_158203_010 0.1711337038 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
11 Hb_005300_050 0.1755468696 - - hypothetical protein VITISV_001308 [Vitis vinifera]
12 Hb_003908_010 0.1755514923 - - polyprotein [Oryza australiensis]
13 Hb_001255_070 0.1755660217 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_000917_020 0.1755810953 - - polyprotein [Citrus endogenous pararetrovirus]
15 Hb_007524_040 0.1755855089 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
16 Hb_005352_020 0.1757894089 - - -
17 Hb_049490_010 0.1763093439 - - hypothetical protein VITISV_013805 [Vitis vinifera]
18 Hb_055002_010 0.1766727874 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
19 Hb_003898_010 0.1769467031 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
20 Hb_010523_020 0.1770226661 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_180367_010 Hb_180367_010 Hb_003567_020 Hb_003567_020 Hb_180367_010--Hb_003567_020 Hb_003739_040 Hb_003739_040 Hb_180367_010--Hb_003739_040 Hb_017415_010 Hb_017415_010 Hb_180367_010--Hb_017415_010 Hb_003157_020 Hb_003157_020 Hb_180367_010--Hb_003157_020 Hb_002149_030 Hb_002149_030 Hb_180367_010--Hb_002149_030 Hb_164415_010 Hb_164415_010 Hb_180367_010--Hb_164415_010 Hb_003567_020--Hb_003739_040 Hb_003567_020--Hb_017415_010 Hb_121041_010 Hb_121041_010 Hb_003567_020--Hb_121041_010 Hb_003567_020--Hb_002149_030 Hb_158203_010 Hb_158203_010 Hb_003567_020--Hb_158203_010 Hb_006599_040 Hb_006599_040 Hb_003739_040--Hb_006599_040 Hb_004145_030 Hb_004145_030 Hb_003739_040--Hb_004145_030 Hb_174010_030 Hb_174010_030 Hb_003739_040--Hb_174010_030 Hb_000777_010 Hb_000777_010 Hb_003739_040--Hb_000777_010 Hb_017415_010--Hb_002149_030 Hb_017415_010--Hb_003157_020 Hb_017415_010--Hb_164415_010 Hb_000248_040 Hb_000248_040 Hb_017415_010--Hb_000248_040 Hb_171685_080 Hb_171685_080 Hb_003157_020--Hb_171685_080 Hb_010053_050 Hb_010053_050 Hb_003157_020--Hb_010053_050 Hb_003157_020--Hb_164415_010 Hb_010053_060 Hb_010053_060 Hb_003157_020--Hb_010053_060 Hb_000284_050 Hb_000284_050 Hb_003157_020--Hb_000284_050 Hb_002149_030--Hb_000248_040 Hb_000329_460 Hb_000329_460 Hb_002149_030--Hb_000329_460 Hb_003797_030 Hb_003797_030 Hb_002149_030--Hb_003797_030 Hb_025662_020 Hb_025662_020 Hb_002149_030--Hb_025662_020 Hb_000646_030 Hb_000646_030 Hb_002149_030--Hb_000646_030 Hb_164415_010--Hb_171685_080 Hb_006040_010 Hb_006040_010 Hb_164415_010--Hb_006040_010 Hb_004987_050 Hb_004987_050 Hb_164415_010--Hb_004987_050 Hb_005054_140 Hb_005054_140 Hb_164415_010--Hb_005054_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.035526 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0255683 0.528371

CAGE analysis