Hb_000329_460

Information

Type -
Description -
Location Contig329: 303695-303940
Sequence    

Annotation

kegg
ID csv:101220008
description protein transport protein Sec61 subunit beta-like
nr
ID XP_011650635.1
description PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus]
swissprot
ID P38389
description Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=1 SV=1
trembl
ID A0A0A0L6Y8
description Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117430 PE=4 SV=1
Gene Ontology
ID GO:0005784
description protein transport protein sec61 subunit beta-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000329_460 0.0 - - PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus]
2 Hb_000248_040 0.0237050667 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
3 Hb_003797_030 0.0360194266 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_025662_020 0.0361560284 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000646_030 0.0361891667 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_005379_010 0.0367204067 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_074822_010 0.0384889059 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
8 Hb_121954_010 0.0385661329 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
9 Hb_003279_010 0.0388362817 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
10 Hb_000300_460 0.0420564663 - - Mavicyanin, putative [Ricinus communis]
11 Hb_000143_070 0.0487519633 - - -
12 Hb_014929_010 0.0569901311 - - -
13 Hb_004951_050 0.0607585978 - - conserved hypothetical protein [Ricinus communis]
14 Hb_012807_090 0.0684847444 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
15 Hb_002149_030 0.0887954502 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
16 Hb_017415_010 0.176344576 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
17 Hb_002850_030 0.1823743082 - - -
18 Hb_003567_020 0.2051028913 - - conserved hypothetical protein [Ricinus communis]
19 Hb_180367_010 0.2085658002 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
20 Hb_002042_240 0.2086625982 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000329_460 Hb_000329_460 Hb_000248_040 Hb_000248_040 Hb_000329_460--Hb_000248_040 Hb_003797_030 Hb_003797_030 Hb_000329_460--Hb_003797_030 Hb_025662_020 Hb_025662_020 Hb_000329_460--Hb_025662_020 Hb_000646_030 Hb_000646_030 Hb_000329_460--Hb_000646_030 Hb_005379_010 Hb_005379_010 Hb_000329_460--Hb_005379_010 Hb_074822_010 Hb_074822_010 Hb_000329_460--Hb_074822_010 Hb_000248_040--Hb_003797_030 Hb_000248_040--Hb_025662_020 Hb_000248_040--Hb_000646_030 Hb_000248_040--Hb_005379_010 Hb_000248_040--Hb_074822_010 Hb_003797_030--Hb_025662_020 Hb_003797_030--Hb_000646_030 Hb_003797_030--Hb_005379_010 Hb_003797_030--Hb_074822_010 Hb_121954_010 Hb_121954_010 Hb_003797_030--Hb_121954_010 Hb_003279_010 Hb_003279_010 Hb_003797_030--Hb_003279_010 Hb_025662_020--Hb_000646_030 Hb_025662_020--Hb_005379_010 Hb_025662_020--Hb_074822_010 Hb_025662_020--Hb_121954_010 Hb_025662_020--Hb_003279_010 Hb_000646_030--Hb_005379_010 Hb_000646_030--Hb_074822_010 Hb_000646_030--Hb_121954_010 Hb_000646_030--Hb_003279_010 Hb_005379_010--Hb_074822_010 Hb_005379_010--Hb_121954_010 Hb_005379_010--Hb_003279_010 Hb_074822_010--Hb_121954_010 Hb_074822_010--Hb_003279_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.296632 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.40834

CAGE analysis