Hb_000248_040

Information

Type -
Description -
Location Contig248: 71384-72478
Sequence    

Annotation

kegg
ID gmx:102670328
description uncharacterized LOC102670328
nr
ID XP_012070206.1
description PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9QD67
description Uncharacterized protein OS=Morus notabilis GN=L484_012687 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000248_040 0.0 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
2 Hb_000329_460 0.0237050667 - - PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus]
3 Hb_003797_030 0.0596817315 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_025662_020 0.0598180841 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_000646_030 0.0598511619 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_005379_010 0.0603814265 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_074822_010 0.0621466125 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
8 Hb_121954_010 0.0622236926 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
9 Hb_003279_010 0.0624933257 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
10 Hb_002149_030 0.0652381151 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
11 Hb_000300_460 0.0657071834 - - Mavicyanin, putative [Ricinus communis]
12 Hb_000143_070 0.0723884846 - - -
13 Hb_014929_010 0.0806073254 - - -
14 Hb_004951_050 0.0843662922 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012807_090 0.0920717186 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
16 Hb_017415_010 0.1557206088 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
17 Hb_003567_020 0.1931444716 - - conserved hypothetical protein [Ricinus communis]
18 Hb_180367_010 0.1931981339 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
19 Hb_002850_030 0.205502625 - - -
20 Hb_002042_240 0.2316543242 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_000248_040 Hb_000248_040 Hb_000329_460 Hb_000329_460 Hb_000248_040--Hb_000329_460 Hb_003797_030 Hb_003797_030 Hb_000248_040--Hb_003797_030 Hb_025662_020 Hb_025662_020 Hb_000248_040--Hb_025662_020 Hb_000646_030 Hb_000646_030 Hb_000248_040--Hb_000646_030 Hb_005379_010 Hb_005379_010 Hb_000248_040--Hb_005379_010 Hb_074822_010 Hb_074822_010 Hb_000248_040--Hb_074822_010 Hb_000329_460--Hb_003797_030 Hb_000329_460--Hb_025662_020 Hb_000329_460--Hb_000646_030 Hb_000329_460--Hb_005379_010 Hb_000329_460--Hb_074822_010 Hb_003797_030--Hb_025662_020 Hb_003797_030--Hb_000646_030 Hb_003797_030--Hb_005379_010 Hb_003797_030--Hb_074822_010 Hb_121954_010 Hb_121954_010 Hb_003797_030--Hb_121954_010 Hb_003279_010 Hb_003279_010 Hb_003797_030--Hb_003279_010 Hb_025662_020--Hb_000646_030 Hb_025662_020--Hb_005379_010 Hb_025662_020--Hb_074822_010 Hb_025662_020--Hb_121954_010 Hb_025662_020--Hb_003279_010 Hb_000646_030--Hb_005379_010 Hb_000646_030--Hb_074822_010 Hb_000646_030--Hb_121954_010 Hb_000646_030--Hb_003279_010 Hb_005379_010--Hb_074822_010 Hb_005379_010--Hb_121954_010 Hb_005379_010--Hb_003279_010 Hb_074822_010--Hb_121954_010 Hb_074822_010--Hb_003279_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0453095 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.250185

CAGE analysis