Hb_002149_030

Information

Type -
Description -
Location Contig2149: 20831-21751
Sequence    

Annotation

kegg
ID rcu:RCOM_1213160
description hypothetical protein
nr
ID XP_012089605.1
description PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SF25
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1213160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002149_030 0.0 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
2 Hb_000248_040 0.0652381151 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
3 Hb_000329_460 0.0887954502 - - PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus]
4 Hb_017415_010 0.103592065 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
5 Hb_003797_030 0.1244368746 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_025662_020 0.1245717368 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_000646_030 0.1246044528 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_005379_010 0.1251289053 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_074822_010 0.1268745794 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
10 Hb_121954_010 0.1269508017 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]
11 Hb_003279_010 0.1272174306 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
12 Hb_000300_460 0.1303950352 - - Mavicyanin, putative [Ricinus communis]
13 Hb_000143_070 0.1369984077 - - -
14 Hb_014929_010 0.1451168461 - - -
15 Hb_004951_050 0.1488282985 - - conserved hypothetical protein [Ricinus communis]
16 Hb_012807_090 0.1564333462 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
17 Hb_180367_010 0.1601131406 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
18 Hb_003567_020 0.1721385574 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003157_020 0.1843709105 - - PREDICTED: uncharacterized protein LOC104809111 [Tarenaya hassleriana]
20 Hb_164415_010 0.1921995258 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002149_030 Hb_002149_030 Hb_000248_040 Hb_000248_040 Hb_002149_030--Hb_000248_040 Hb_000329_460 Hb_000329_460 Hb_002149_030--Hb_000329_460 Hb_017415_010 Hb_017415_010 Hb_002149_030--Hb_017415_010 Hb_003797_030 Hb_003797_030 Hb_002149_030--Hb_003797_030 Hb_025662_020 Hb_025662_020 Hb_002149_030--Hb_025662_020 Hb_000646_030 Hb_000646_030 Hb_002149_030--Hb_000646_030 Hb_000248_040--Hb_000329_460 Hb_000248_040--Hb_003797_030 Hb_000248_040--Hb_025662_020 Hb_000248_040--Hb_000646_030 Hb_005379_010 Hb_005379_010 Hb_000248_040--Hb_005379_010 Hb_074822_010 Hb_074822_010 Hb_000248_040--Hb_074822_010 Hb_000329_460--Hb_003797_030 Hb_000329_460--Hb_025662_020 Hb_000329_460--Hb_000646_030 Hb_000329_460--Hb_005379_010 Hb_000329_460--Hb_074822_010 Hb_180367_010 Hb_180367_010 Hb_017415_010--Hb_180367_010 Hb_003157_020 Hb_003157_020 Hb_017415_010--Hb_003157_020 Hb_164415_010 Hb_164415_010 Hb_017415_010--Hb_164415_010 Hb_003567_020 Hb_003567_020 Hb_017415_010--Hb_003567_020 Hb_017415_010--Hb_000248_040 Hb_003797_030--Hb_025662_020 Hb_003797_030--Hb_000646_030 Hb_003797_030--Hb_005379_010 Hb_003797_030--Hb_074822_010 Hb_121954_010 Hb_121954_010 Hb_003797_030--Hb_121954_010 Hb_003279_010 Hb_003279_010 Hb_003797_030--Hb_003279_010 Hb_025662_020--Hb_000646_030 Hb_025662_020--Hb_005379_010 Hb_025662_020--Hb_074822_010 Hb_025662_020--Hb_121954_010 Hb_025662_020--Hb_003279_010 Hb_000646_030--Hb_005379_010 Hb_000646_030--Hb_074822_010 Hb_000646_030--Hb_121954_010 Hb_000646_030--Hb_003279_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0306885 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.269586

CAGE analysis