Hb_003567_020

Information

Type -
Description -
Location Contig3567: 61885-67988
Sequence    

Annotation

kegg
ID rcu:RCOM_0824170
description hypothetical protein
nr
ID XP_002525845.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SIM6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0824170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003567_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_180367_010 0.0406665972 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
3 Hb_003739_040 0.0869353825 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
4 Hb_017415_010 0.1218722254 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
5 Hb_121041_010 0.1611933186 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
6 Hb_002149_030 0.1721385574 - - PREDICTED: uncharacterized protein LOC105647984 [Jatropha curcas]
7 Hb_158203_010 0.1754568343 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
8 Hb_003157_020 0.1787608575 - - PREDICTED: uncharacterized protein LOC104809111 [Tarenaya hassleriana]
9 Hb_033066_030 0.1799791971 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
10 Hb_002060_040 0.1806868369 - - putative polyprotein [Oryza sativa Japonica Group]
11 Hb_006474_010 0.1833028875 - - hypothetical protein VITISV_032357 [Vitis vinifera]
12 Hb_000248_040 0.1931444716 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
13 Hb_031866_030 0.1935742209 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
14 Hb_000051_100 0.1944530123 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
15 Hb_164415_010 0.1971521246 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000789_210 0.2005124711 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
17 Hb_000668_030 0.2005182769 - - -
18 Hb_001115_060 0.2005224462 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
19 Hb_002281_060 0.2005333841 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
20 Hb_004984_090 0.2005737953 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_003567_020 Hb_003567_020 Hb_180367_010 Hb_180367_010 Hb_003567_020--Hb_180367_010 Hb_003739_040 Hb_003739_040 Hb_003567_020--Hb_003739_040 Hb_017415_010 Hb_017415_010 Hb_003567_020--Hb_017415_010 Hb_121041_010 Hb_121041_010 Hb_003567_020--Hb_121041_010 Hb_002149_030 Hb_002149_030 Hb_003567_020--Hb_002149_030 Hb_158203_010 Hb_158203_010 Hb_003567_020--Hb_158203_010 Hb_180367_010--Hb_003739_040 Hb_180367_010--Hb_017415_010 Hb_003157_020 Hb_003157_020 Hb_180367_010--Hb_003157_020 Hb_180367_010--Hb_002149_030 Hb_164415_010 Hb_164415_010 Hb_180367_010--Hb_164415_010 Hb_006599_040 Hb_006599_040 Hb_003739_040--Hb_006599_040 Hb_004145_030 Hb_004145_030 Hb_003739_040--Hb_004145_030 Hb_174010_030 Hb_174010_030 Hb_003739_040--Hb_174010_030 Hb_000777_010 Hb_000777_010 Hb_003739_040--Hb_000777_010 Hb_017415_010--Hb_002149_030 Hb_017415_010--Hb_003157_020 Hb_017415_010--Hb_164415_010 Hb_000248_040 Hb_000248_040 Hb_017415_010--Hb_000248_040 Hb_121041_010--Hb_158203_010 Hb_121041_010--Hb_003739_040 Hb_121041_010--Hb_180367_010 Hb_054127_020 Hb_054127_020 Hb_121041_010--Hb_054127_020 Hb_006474_010 Hb_006474_010 Hb_121041_010--Hb_006474_010 Hb_002149_030--Hb_000248_040 Hb_000329_460 Hb_000329_460 Hb_002149_030--Hb_000329_460 Hb_003797_030 Hb_003797_030 Hb_002149_030--Hb_003797_030 Hb_025662_020 Hb_025662_020 Hb_002149_030--Hb_025662_020 Hb_000646_030 Hb_000646_030 Hb_002149_030--Hb_000646_030 Hb_056095_010 Hb_056095_010 Hb_158203_010--Hb_056095_010 Hb_158203_010--Hb_180367_010 Hb_004445_030 Hb_004445_030 Hb_158203_010--Hb_004445_030 Hb_158203_010--Hb_054127_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0211395 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0152909 0.234175

CAGE analysis