Hb_056095_010

Information

Type -
Description -
Location Contig56095: 20664-21318
Sequence    

Annotation

kegg
ID rcu:RCOM_2080430
description hypothetical protein
nr
ID XP_002534822.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T9A3
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_2080430 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48781: 20864-21321
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056095_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_061940_010 0.1536313489 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
3 Hb_158203_010 0.1590833815 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_152483_010 0.1753402668 - - hypothetical protein JCGZ_22450 [Jatropha curcas]
5 Hb_000710_100 0.1753656653 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
6 Hb_041711_040 0.1754318686 - - hypothetical protein, partial [Pseudomonas fluorescens]
7 Hb_010623_010 0.1754481407 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
8 Hb_039164_010 0.175453444 - - -
9 Hb_000629_090 0.17547704 - - hypothetical protein JCGZ_09480 [Jatropha curcas]
10 Hb_004683_030 0.1756067854 - - PREDICTED: uncharacterized protein LOC105778947 [Gossypium raimondii]
11 Hb_003625_030 0.1756697795 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
12 Hb_000311_130 0.1757535372 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
13 Hb_006663_080 0.1781639154 - - PREDICTED: uncharacterized protein LOC104107451 [Nicotiana tomentosiformis]
14 Hb_002260_210 0.1813959104 - - unnamed protein product [Vitis vinifera]
15 Hb_000108_030 0.1814032806 - - -
16 Hb_000710_110 0.183819015 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
17 Hb_000540_180 0.185193743 - - PREDICTED: probable receptor protein kinase TMK1 [Jatropha curcas]
18 Hb_025628_010 0.1853267213 - - PREDICTED: uncharacterized protein LOC104233990 [Nicotiana sylvestris]
19 Hb_006221_020 0.1855473117 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
20 Hb_010023_020 0.193297095 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_056095_010 Hb_056095_010 Hb_061940_010 Hb_061940_010 Hb_056095_010--Hb_061940_010 Hb_158203_010 Hb_158203_010 Hb_056095_010--Hb_158203_010 Hb_152483_010 Hb_152483_010 Hb_056095_010--Hb_152483_010 Hb_000710_100 Hb_000710_100 Hb_056095_010--Hb_000710_100 Hb_041711_040 Hb_041711_040 Hb_056095_010--Hb_041711_040 Hb_010623_010 Hb_010623_010 Hb_056095_010--Hb_010623_010 Hb_004052_130 Hb_004052_130 Hb_061940_010--Hb_004052_130 Hb_002260_210 Hb_002260_210 Hb_061940_010--Hb_002260_210 Hb_000108_030 Hb_000108_030 Hb_061940_010--Hb_000108_030 Hb_000710_110 Hb_000710_110 Hb_061940_010--Hb_000710_110 Hb_000311_130 Hb_000311_130 Hb_061940_010--Hb_000311_130 Hb_121041_010 Hb_121041_010 Hb_158203_010--Hb_121041_010 Hb_180367_010 Hb_180367_010 Hb_158203_010--Hb_180367_010 Hb_003567_020 Hb_003567_020 Hb_158203_010--Hb_003567_020 Hb_004445_030 Hb_004445_030 Hb_158203_010--Hb_004445_030 Hb_054127_020 Hb_054127_020 Hb_158203_010--Hb_054127_020 Hb_152483_010--Hb_041711_040 Hb_039164_010 Hb_039164_010 Hb_152483_010--Hb_039164_010 Hb_000629_090 Hb_000629_090 Hb_152483_010--Hb_000629_090 Hb_004683_030 Hb_004683_030 Hb_152483_010--Hb_004683_030 Hb_003625_030 Hb_003625_030 Hb_152483_010--Hb_003625_030 Hb_006663_080 Hb_006663_080 Hb_152483_010--Hb_006663_080 Hb_000710_100--Hb_010623_010 Hb_000710_100--Hb_000311_130 Hb_000710_100--Hb_152483_010 Hb_000710_100--Hb_041711_040 Hb_000710_100--Hb_039164_010 Hb_000710_100--Hb_000629_090 Hb_041711_040--Hb_039164_010 Hb_041711_040--Hb_000629_090 Hb_041711_040--Hb_004683_030 Hb_041711_040--Hb_003625_030 Hb_041711_040--Hb_006663_080 Hb_010623_010--Hb_000311_130 Hb_010623_010--Hb_152483_010 Hb_010623_010--Hb_041711_040 Hb_010623_010--Hb_039164_010 Hb_010623_010--Hb_000629_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0483968 0.0824215 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.677123

CAGE analysis