Hb_061940_010

Information

Type -
Description -
Location Contig61940: 162-1982
Sequence    

Annotation

kegg
ID bvg:104885396
description uncharacterized LOC104885396
nr
ID XP_009770762.1
description PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_061940_010 0.0 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
2 Hb_056095_010 0.1536313489 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004052_130 0.2067504755 - - PREDICTED: cytochrome P450 78A5 [Jatropha curcas]
4 Hb_002260_210 0.2087827811 - - unnamed protein product [Vitis vinifera]
5 Hb_000108_030 0.2087842885 - - -
6 Hb_000710_110 0.2094115836 - - Vps51/Vps67 [Citrus endogenous pararetrovirus]
7 Hb_000311_130 0.2094269666 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
8 Hb_010623_010 0.2098045327 - - PREDICTED: uncharacterized protein LOC105643732 [Jatropha curcas]
9 Hb_000710_100 0.2099399056 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
10 Hb_006221_020 0.2099890651 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
11 Hb_010023_020 0.2133888166 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_006617_030 0.2134170809 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_002020_030 0.2136388061 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
14 Hb_152483_010 0.2138082059 - - hypothetical protein JCGZ_22450 [Jatropha curcas]
15 Hb_030085_050 0.2138515006 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
16 Hb_000266_070 0.213921353 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105765578 [Gossypium raimondii]
17 Hb_041711_040 0.214108936 - - hypothetical protein, partial [Pseudomonas fluorescens]
18 Hb_039164_010 0.2141762751 - - -
19 Hb_159777_010 0.2142026594 - - JHL22C18.10 [Jatropha curcas]
20 Hb_000629_090 0.214248617 - - hypothetical protein JCGZ_09480 [Jatropha curcas]

Gene co-expression network

sample Hb_061940_010 Hb_061940_010 Hb_056095_010 Hb_056095_010 Hb_061940_010--Hb_056095_010 Hb_004052_130 Hb_004052_130 Hb_061940_010--Hb_004052_130 Hb_002260_210 Hb_002260_210 Hb_061940_010--Hb_002260_210 Hb_000108_030 Hb_000108_030 Hb_061940_010--Hb_000108_030 Hb_000710_110 Hb_000710_110 Hb_061940_010--Hb_000710_110 Hb_000311_130 Hb_000311_130 Hb_061940_010--Hb_000311_130 Hb_158203_010 Hb_158203_010 Hb_056095_010--Hb_158203_010 Hb_152483_010 Hb_152483_010 Hb_056095_010--Hb_152483_010 Hb_000710_100 Hb_000710_100 Hb_056095_010--Hb_000710_100 Hb_041711_040 Hb_041711_040 Hb_056095_010--Hb_041711_040 Hb_010623_010 Hb_010623_010 Hb_056095_010--Hb_010623_010 Hb_004445_030 Hb_004445_030 Hb_004052_130--Hb_004445_030 Hb_009355_010 Hb_009355_010 Hb_004052_130--Hb_009355_010 Hb_004052_130--Hb_000311_130 Hb_004052_130--Hb_010623_010 Hb_004052_130--Hb_000710_100 Hb_004052_130--Hb_002260_210 Hb_002260_210--Hb_000108_030 Hb_002260_210--Hb_000710_110 Hb_006221_020 Hb_006221_020 Hb_002260_210--Hb_006221_020 Hb_002260_210--Hb_000311_130 Hb_010023_020 Hb_010023_020 Hb_002260_210--Hb_010023_020 Hb_006617_030 Hb_006617_030 Hb_002260_210--Hb_006617_030 Hb_000108_030--Hb_000710_110 Hb_000108_030--Hb_006221_020 Hb_000108_030--Hb_000311_130 Hb_000108_030--Hb_010023_020 Hb_000108_030--Hb_006617_030 Hb_000710_110--Hb_006221_020 Hb_000710_110--Hb_010023_020 Hb_000710_110--Hb_006617_030 Hb_002020_030 Hb_002020_030 Hb_000710_110--Hb_002020_030 Hb_000311_130--Hb_010623_010 Hb_000311_130--Hb_000710_100 Hb_000311_130--Hb_152483_010 Hb_000311_130--Hb_041711_040 Hb_039164_010 Hb_039164_010 Hb_000311_130--Hb_039164_010 Hb_000629_090 Hb_000629_090 Hb_000311_130--Hb_000629_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0130244 0.0388679 0 0 0.0130486 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.244523

CAGE analysis