Hb_121041_010

Information

Type -
Description -
Location Contig121041: 904-2978
Sequence    

Annotation

kegg
ID atr:s00876p00007370
description AMTR_s00876p00007370; hypothetical protein
nr
ID XP_012458064.1
description PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121041_010 0.0 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
2 Hb_158203_010 0.0699049597 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
3 Hb_003739_040 0.1582211858 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
4 Hb_003567_020 0.1611933186 - - conserved hypothetical protein [Ricinus communis]
5 Hb_180367_010 0.1667515977 - - PREDICTED: uncharacterized protein LOC105794100 [Gossypium raimondii]
6 Hb_054127_020 0.1673864975 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
7 Hb_006474_010 0.1922440785 - - hypothetical protein VITISV_032357 [Vitis vinifera]
8 Hb_006356_030 0.1928752057 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
9 Hb_000405_010 0.1933047057 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
10 Hb_000923_110 0.1936696563 - - PREDICTED: uncharacterized protein LOC102624489 [Citrus sinensis]
11 Hb_004445_030 0.1970235382 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000011_470 0.2028541434 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]
13 Hb_002576_010 0.2050436613 - - -
14 Hb_006040_150 0.2058324953 - - -
15 Hb_013420_040 0.2061736814 - - unnamed protein product [Vitis vinifera]
16 Hb_047923_030 0.2138607839 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
17 Hb_017415_010 0.2159787348 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
18 Hb_056095_010 0.2180189762 - - conserved hypothetical protein [Ricinus communis]
19 Hb_011931_090 0.2188267179 - - -
20 Hb_015076_020 0.2204178756 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_121041_010 Hb_121041_010 Hb_158203_010 Hb_158203_010 Hb_121041_010--Hb_158203_010 Hb_003739_040 Hb_003739_040 Hb_121041_010--Hb_003739_040 Hb_003567_020 Hb_003567_020 Hb_121041_010--Hb_003567_020 Hb_180367_010 Hb_180367_010 Hb_121041_010--Hb_180367_010 Hb_054127_020 Hb_054127_020 Hb_121041_010--Hb_054127_020 Hb_006474_010 Hb_006474_010 Hb_121041_010--Hb_006474_010 Hb_056095_010 Hb_056095_010 Hb_158203_010--Hb_056095_010 Hb_158203_010--Hb_180367_010 Hb_158203_010--Hb_003567_020 Hb_004445_030 Hb_004445_030 Hb_158203_010--Hb_004445_030 Hb_158203_010--Hb_054127_020 Hb_003739_040--Hb_180367_010 Hb_003739_040--Hb_003567_020 Hb_006599_040 Hb_006599_040 Hb_003739_040--Hb_006599_040 Hb_004145_030 Hb_004145_030 Hb_003739_040--Hb_004145_030 Hb_174010_030 Hb_174010_030 Hb_003739_040--Hb_174010_030 Hb_000777_010 Hb_000777_010 Hb_003739_040--Hb_000777_010 Hb_003567_020--Hb_180367_010 Hb_017415_010 Hb_017415_010 Hb_003567_020--Hb_017415_010 Hb_002149_030 Hb_002149_030 Hb_003567_020--Hb_002149_030 Hb_180367_010--Hb_017415_010 Hb_003157_020 Hb_003157_020 Hb_180367_010--Hb_003157_020 Hb_180367_010--Hb_002149_030 Hb_164415_010 Hb_164415_010 Hb_180367_010--Hb_164415_010 Hb_006356_030 Hb_006356_030 Hb_054127_020--Hb_006356_030 Hb_000405_010 Hb_000405_010 Hb_054127_020--Hb_000405_010 Hb_000923_110 Hb_000923_110 Hb_054127_020--Hb_000923_110 Hb_054127_020--Hb_004445_030 Hb_002576_010 Hb_002576_010 Hb_054127_020--Hb_002576_010 Hb_047923_030 Hb_047923_030 Hb_054127_020--Hb_047923_030 Hb_006474_010--Hb_003567_020 Hb_006474_010--Hb_180367_010 Hb_006474_010--Hb_003739_040 Hb_042463_070 Hb_042463_070 Hb_006474_010--Hb_042463_070 Hb_006474_010--Hb_158203_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0153951 0.0127624 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0220822 0.23009

CAGE analysis