Hb_002599_040

Information

Type -
Description -
Location Contig2599: 86988-89084
Sequence    

Annotation

kegg
ID bvg:104885396
description uncharacterized LOC104885396
nr
ID XP_009612366.1
description PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A0A061F1K1
description Retrotransposon-like protein OS=Theobroma cacao GN=TCM_022803 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002599_040 0.0 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
2 Hb_000307_230 0.1775716598 - - -
3 Hb_000060_060 0.1974836623 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22940 [Jatropha curcas]
4 Hb_008730_010 0.2320331151 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_106815_010 0.2394861364 - - hypothetical protein, conserved [Eimeria acervulina]
6 Hb_008326_010 0.2540675667 - - putative polyprotein [Oryza sativa Japonica Group]
7 Hb_000614_270 0.2685814226 - - -
8 Hb_154997_010 0.2828984081 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
9 Hb_043708_010 0.2856256827 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
10 Hb_006933_010 0.2877441976 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_002869_070 0.288608393 - - -
12 Hb_115376_010 0.2935660213 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
13 Hb_004124_010 0.3012203675 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_003523_040 0.3021511015 - - F15O4.13 [Arabidopsis thaliana]
15 Hb_159938_010 0.3034117499 - - phosphoprotein phosphatase, putative [Ricinus communis]
16 Hb_007790_040 0.3038751731 - - PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis]
17 Hb_002495_050 0.3064492789 - - PREDICTED: uncharacterized protein LOC105639161 [Jatropha curcas]
18 Hb_001124_170 0.3072866348 - - putative retrotransposon protein [Phyllostachys edulis]
19 Hb_166124_010 0.3104760891 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
20 Hb_000764_040 0.3124915904 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]

Gene co-expression network

sample Hb_002599_040 Hb_002599_040 Hb_000307_230 Hb_000307_230 Hb_002599_040--Hb_000307_230 Hb_000060_060 Hb_000060_060 Hb_002599_040--Hb_000060_060 Hb_008730_010 Hb_008730_010 Hb_002599_040--Hb_008730_010 Hb_106815_010 Hb_106815_010 Hb_002599_040--Hb_106815_010 Hb_008326_010 Hb_008326_010 Hb_002599_040--Hb_008326_010 Hb_000614_270 Hb_000614_270 Hb_002599_040--Hb_000614_270 Hb_000764_040 Hb_000764_040 Hb_000307_230--Hb_000764_040 Hb_000307_230--Hb_106815_010 Hb_000307_230--Hb_000614_270 Hb_010883_130 Hb_010883_130 Hb_000307_230--Hb_010883_130 Hb_115376_010 Hb_115376_010 Hb_000307_230--Hb_115376_010 Hb_000060_060--Hb_000614_270 Hb_104735_010 Hb_104735_010 Hb_000060_060--Hb_104735_010 Hb_143004_010 Hb_143004_010 Hb_000060_060--Hb_143004_010 Hb_003739_040 Hb_003739_040 Hb_000060_060--Hb_003739_040 Hb_006474_010 Hb_006474_010 Hb_000060_060--Hb_006474_010 Hb_000101_150 Hb_000101_150 Hb_008730_010--Hb_000101_150 Hb_043708_010 Hb_043708_010 Hb_008730_010--Hb_043708_010 Hb_076795_010 Hb_076795_010 Hb_008730_010--Hb_076795_010 Hb_008730_010--Hb_106815_010 Hb_000399_010 Hb_000399_010 Hb_008730_010--Hb_000399_010 Hb_002869_070 Hb_002869_070 Hb_106815_010--Hb_002869_070 Hb_004124_010 Hb_004124_010 Hb_106815_010--Hb_004124_010 Hb_006933_010 Hb_006933_010 Hb_106815_010--Hb_006933_010 Hb_006157_050 Hb_006157_050 Hb_106815_010--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_106815_010--Hb_065943_010 Hb_099723_010 Hb_099723_010 Hb_106815_010--Hb_099723_010 Hb_008326_010--Hb_115376_010 Hb_003005_040 Hb_003005_040 Hb_008326_010--Hb_003005_040 Hb_016748_010 Hb_016748_010 Hb_008326_010--Hb_016748_010 Hb_077935_010 Hb_077935_010 Hb_008326_010--Hb_077935_010 Hb_007054_050 Hb_007054_050 Hb_008326_010--Hb_007054_050 Hb_003746_020 Hb_003746_020 Hb_000614_270--Hb_003746_020 Hb_000614_270--Hb_104735_010 Hb_002482_050 Hb_002482_050 Hb_000614_270--Hb_002482_050 Hb_000614_270--Hb_143004_010 Hb_062192_060 Hb_062192_060 Hb_000614_270--Hb_062192_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00968471 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0173158 0.0328561 0.013775 0.109856

CAGE analysis