Hb_008730_010

Information

Type -
Description -
Location Contig8730: 20-10552
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008730_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_000101_150 0.162195351 - - -
3 Hb_002599_040 0.2320331151 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
4 Hb_043708_010 0.2355436147 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
5 Hb_076795_010 0.2574210121 - - hypothetical protein POPTR_0001s07680g, partial [Populus trichocarpa]
6 Hb_106815_010 0.2695042221 - - hypothetical protein, conserved [Eimeria acervulina]
7 Hb_000399_010 0.2798227302 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_000307_230 0.2883592235 - - -
9 Hb_007790_040 0.2953253314 - - PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis]
10 Hb_000031_350 0.2965029079 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic isoform X2 [Cucumis melo]
11 Hb_170156_010 0.2967490235 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_012098_190 0.3015310166 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
13 Hb_008326_010 0.3019865584 - - putative polyprotein [Oryza sativa Japonica Group]
14 Hb_002791_020 0.3021083307 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
15 Hb_000144_040 0.3028433149 - - hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
16 Hb_172388_010 0.3043048378 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
17 Hb_004650_060 0.3044837379 - - putative retrotransposon protein [Phyllostachys edulis]
18 Hb_039262_010 0.313009754 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_010757_010 0.3152101386 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
20 Hb_011478_010 0.3173160577 - - -

Gene co-expression network

sample Hb_008730_010 Hb_008730_010 Hb_000101_150 Hb_000101_150 Hb_008730_010--Hb_000101_150 Hb_002599_040 Hb_002599_040 Hb_008730_010--Hb_002599_040 Hb_043708_010 Hb_043708_010 Hb_008730_010--Hb_043708_010 Hb_076795_010 Hb_076795_010 Hb_008730_010--Hb_076795_010 Hb_106815_010 Hb_106815_010 Hb_008730_010--Hb_106815_010 Hb_000399_010 Hb_000399_010 Hb_008730_010--Hb_000399_010 Hb_170156_010 Hb_170156_010 Hb_000101_150--Hb_170156_010 Hb_000101_150--Hb_076795_010 Hb_000101_150--Hb_043708_010 Hb_000031_350 Hb_000031_350 Hb_000101_150--Hb_000031_350 Hb_022132_020 Hb_022132_020 Hb_000101_150--Hb_022132_020 Hb_000307_230 Hb_000307_230 Hb_002599_040--Hb_000307_230 Hb_000060_060 Hb_000060_060 Hb_002599_040--Hb_000060_060 Hb_002599_040--Hb_106815_010 Hb_008326_010 Hb_008326_010 Hb_002599_040--Hb_008326_010 Hb_000614_270 Hb_000614_270 Hb_002599_040--Hb_000614_270 Hb_004650_060 Hb_004650_060 Hb_043708_010--Hb_004650_060 Hb_019656_010 Hb_019656_010 Hb_043708_010--Hb_019656_010 Hb_131102_010 Hb_131102_010 Hb_043708_010--Hb_131102_010 Hb_002791_020 Hb_002791_020 Hb_043708_010--Hb_002791_020 Hb_000154_010 Hb_000154_010 Hb_043708_010--Hb_000154_010 Hb_076795_010--Hb_000031_350 Hb_012098_190 Hb_012098_190 Hb_076795_010--Hb_012098_190 Hb_001188_120 Hb_001188_120 Hb_076795_010--Hb_001188_120 Hb_000144_040 Hb_000144_040 Hb_076795_010--Hb_000144_040 Hb_172388_010 Hb_172388_010 Hb_076795_010--Hb_172388_010 Hb_002869_070 Hb_002869_070 Hb_106815_010--Hb_002869_070 Hb_004124_010 Hb_004124_010 Hb_106815_010--Hb_004124_010 Hb_006933_010 Hb_006933_010 Hb_106815_010--Hb_006933_010 Hb_006157_050 Hb_006157_050 Hb_106815_010--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_106815_010--Hb_065943_010 Hb_099723_010 Hb_099723_010 Hb_106815_010--Hb_099723_010 Hb_011484_010 Hb_011484_010 Hb_000399_010--Hb_011484_010 Hb_000772_040 Hb_000772_040 Hb_000399_010--Hb_000772_040 Hb_000283_080 Hb_000283_080 Hb_000399_010--Hb_000283_080 Hb_036311_020 Hb_036311_020 Hb_000399_010--Hb_036311_020 Hb_003906_090 Hb_003906_090 Hb_000399_010--Hb_003906_090 Hb_001523_020 Hb_001523_020 Hb_000399_010--Hb_001523_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00395064 0 0 0 0.0036962 0.00357284
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00703943 0.0270955 0.00557228 0.0453576

CAGE analysis