Hb_036311_020

Information

Type -
Description -
Location Contig36311: 18070-26516
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036311_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_001523_020 0.157070922 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
3 Hb_000283_080 0.1755284476 - - -
4 Hb_129910_010 0.1875856951 - - PREDICTED: F-box-like/WD repeat-containing protein TBL1X [Populus euphratica]
5 Hb_000362_120 0.2008904049 - - glutamate receptor 2 plant, putative [Ricinus communis]
6 Hb_001511_070 0.2016704239 transcription factor TF Family: G2-like hypothetical protein POPTR_0010s19310g [Populus trichocarpa]
7 Hb_000160_320 0.2028296053 - - hypothetical protein POPTR_0004s08730g [Populus trichocarpa]
8 Hb_001946_250 0.2101106868 - - PREDICTED: dnaJ homolog subfamily C member 18 [Orycteropus afer afer]
9 Hb_005043_010 0.2120416846 - - calcium ion binding protein, putative [Ricinus communis]
10 Hb_029888_010 0.2142361968 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Nicotiana tomentosiformis]
11 Hb_000865_060 0.2222084754 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
12 Hb_000143_030 0.2231860512 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
13 Hb_000856_150 0.2243872125 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
14 Hb_000399_010 0.2248838554 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
15 Hb_001258_030 0.2251220246 - - tRNA-dihydrouridine synthase, putative [Ricinus communis]
16 Hb_000116_430 0.226951073 - - PREDICTED: mitochondrial phosphate carrier protein 1, mitochondrial-like isoform X1 [Jatropha curcas]
17 Hb_000836_530 0.2273571353 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
18 Hb_001898_070 0.2355095887 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Jatropha curcas]
19 Hb_009455_020 0.2360460348 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
20 Hb_042202_030 0.2410252048 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]

Gene co-expression network

sample Hb_036311_020 Hb_036311_020 Hb_001523_020 Hb_001523_020 Hb_036311_020--Hb_001523_020 Hb_000283_080 Hb_000283_080 Hb_036311_020--Hb_000283_080 Hb_129910_010 Hb_129910_010 Hb_036311_020--Hb_129910_010 Hb_000362_120 Hb_000362_120 Hb_036311_020--Hb_000362_120 Hb_001511_070 Hb_001511_070 Hb_036311_020--Hb_001511_070 Hb_000160_320 Hb_000160_320 Hb_036311_020--Hb_000160_320 Hb_001780_120 Hb_001780_120 Hb_001523_020--Hb_001780_120 Hb_054127_050 Hb_054127_050 Hb_001523_020--Hb_054127_050 Hb_001222_050 Hb_001222_050 Hb_001523_020--Hb_001222_050 Hb_001523_020--Hb_000362_120 Hb_130194_010 Hb_130194_010 Hb_001523_020--Hb_130194_010 Hb_000283_080--Hb_001511_070 Hb_000283_080--Hb_129910_010 Hb_002307_170 Hb_002307_170 Hb_000283_080--Hb_002307_170 Hb_001898_070 Hb_001898_070 Hb_000283_080--Hb_001898_070 Hb_000122_210 Hb_000122_210 Hb_000283_080--Hb_000122_210 Hb_000020_120 Hb_000020_120 Hb_000283_080--Hb_000020_120 Hb_000340_390 Hb_000340_390 Hb_129910_010--Hb_000340_390 Hb_129910_010--Hb_001898_070 Hb_042202_030 Hb_042202_030 Hb_129910_010--Hb_042202_030 Hb_129910_010--Hb_000020_120 Hb_003688_150 Hb_003688_150 Hb_129910_010--Hb_003688_150 Hb_002496_040 Hb_002496_040 Hb_000362_120--Hb_002496_040 Hb_002205_190 Hb_002205_190 Hb_000362_120--Hb_002205_190 Hb_001454_190 Hb_001454_190 Hb_000362_120--Hb_001454_190 Hb_012325_020 Hb_012325_020 Hb_000362_120--Hb_012325_020 Hb_000362_120--Hb_000340_390 Hb_007416_270 Hb_007416_270 Hb_000362_120--Hb_007416_270 Hb_005188_020 Hb_005188_020 Hb_001511_070--Hb_005188_020 Hb_002205_130 Hb_002205_130 Hb_001511_070--Hb_002205_130 Hb_003020_220 Hb_003020_220 Hb_001511_070--Hb_003020_220 Hb_029888_010 Hb_029888_010 Hb_001511_070--Hb_029888_010 Hb_000856_150 Hb_000856_150 Hb_001511_070--Hb_000856_150 Hb_000160_320--Hb_000283_080 Hb_007747_210 Hb_007747_210 Hb_000160_320--Hb_007747_210 Hb_003734_110 Hb_003734_110 Hb_000160_320--Hb_003734_110 Hb_000883_060 Hb_000883_060 Hb_000160_320--Hb_000883_060 Hb_011386_020 Hb_011386_020 Hb_000160_320--Hb_011386_020 Hb_001898_160 Hb_001898_160 Hb_000160_320--Hb_001898_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0351391 0.0121591 0.00993337 0 0.0394196 0.0245797
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0304339 0.0359234 0.137331 0.0712601 0.0765815

CAGE analysis