Hb_130194_010

Information

Type -
Description -
Location Contig130194: 2066-3472
Sequence    

Annotation

kegg
ID tcc:TCM_003326
description hypothetical protein
nr
ID XP_009624633.1
description PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M1AL36
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009723 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_130194_010 0.0 - - PREDICTED: uncharacterized protein LOC104115665 [Nicotiana tomentosiformis]
2 Hb_001523_020 0.2006466559 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
3 Hb_000512_070 0.218346456 - - PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
4 Hb_037226_010 0.2496237837 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
5 Hb_002513_030 0.2531600195 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
6 Hb_032496_010 0.2555706475 - - hypothetical protein POPTR_0012s10850g [Populus trichocarpa]
7 Hb_036311_020 0.2582636774 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_054127_050 0.2665560591 - - PREDICTED: uncharacterized protein LOC105638784 isoform X1 [Jatropha curcas]
9 Hb_003861_020 0.2767462614 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like isoform X2 [Nelumbo nucifera]
10 Hb_177179_010 0.2769540259 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
11 Hb_161072_010 0.2803554854 - - -
12 Hb_001545_210 0.2820753318 - - hypothetical protein JCGZ_11132 [Jatropha curcas]
13 Hb_000637_120 0.284657333 - - PREDICTED: aspartic proteinase Asp1 [Jatropha curcas]
14 Hb_000362_120 0.2900899062 - - glutamate receptor 2 plant, putative [Ricinus communis]
15 Hb_001222_050 0.2909089852 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
16 Hb_005439_040 0.2944672738 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
17 Hb_082182_010 0.2946048555 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
18 Hb_005060_020 0.296309775 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
19 Hb_000399_010 0.2979439373 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
20 Hb_000446_060 0.2994628476 - - -

Gene co-expression network

sample Hb_130194_010 Hb_130194_010 Hb_001523_020 Hb_001523_020 Hb_130194_010--Hb_001523_020 Hb_000512_070 Hb_000512_070 Hb_130194_010--Hb_000512_070 Hb_037226_010 Hb_037226_010 Hb_130194_010--Hb_037226_010 Hb_002513_030 Hb_002513_030 Hb_130194_010--Hb_002513_030 Hb_032496_010 Hb_032496_010 Hb_130194_010--Hb_032496_010 Hb_036311_020 Hb_036311_020 Hb_130194_010--Hb_036311_020 Hb_001523_020--Hb_036311_020 Hb_001780_120 Hb_001780_120 Hb_001523_020--Hb_001780_120 Hb_054127_050 Hb_054127_050 Hb_001523_020--Hb_054127_050 Hb_001222_050 Hb_001222_050 Hb_001523_020--Hb_001222_050 Hb_000362_120 Hb_000362_120 Hb_001523_020--Hb_000362_120 Hb_006268_020 Hb_006268_020 Hb_000512_070--Hb_006268_020 Hb_004103_030 Hb_004103_030 Hb_000512_070--Hb_004103_030 Hb_000512_070--Hb_032496_010 Hb_004881_100 Hb_004881_100 Hb_000512_070--Hb_004881_100 Hb_000251_090 Hb_000251_090 Hb_000512_070--Hb_000251_090 Hb_008948_040 Hb_008948_040 Hb_037226_010--Hb_008948_040 Hb_003906_090 Hb_003906_090 Hb_037226_010--Hb_003906_090 Hb_007075_050 Hb_007075_050 Hb_037226_010--Hb_007075_050 Hb_101808_010 Hb_101808_010 Hb_037226_010--Hb_101808_010 Hb_004690_040 Hb_004690_040 Hb_037226_010--Hb_004690_040 Hb_004724_230 Hb_004724_230 Hb_002513_030--Hb_004724_230 Hb_177179_010 Hb_177179_010 Hb_002513_030--Hb_177179_010 Hb_002513_030--Hb_054127_050 Hb_002513_030--Hb_001523_020 Hb_004553_020 Hb_004553_020 Hb_002513_030--Hb_004553_020 Hb_002513_030--Hb_001780_120 Hb_000783_030 Hb_000783_030 Hb_032496_010--Hb_000783_030 Hb_032496_010--Hb_006268_020 Hb_032496_010--Hb_001523_020 Hb_029888_010 Hb_029888_010 Hb_032496_010--Hb_029888_010 Hb_000283_080 Hb_000283_080 Hb_036311_020--Hb_000283_080 Hb_129910_010 Hb_129910_010 Hb_036311_020--Hb_129910_010 Hb_036311_020--Hb_000362_120 Hb_001511_070 Hb_001511_070 Hb_036311_020--Hb_001511_070 Hb_000160_320 Hb_000160_320 Hb_036311_020--Hb_000160_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.130043 0.0898129 0 0.0136872 0.0865697 0.0852031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.161498 0.720658 0.427063 0.200424

CAGE analysis