Hb_008948_040

Information

Type -
Description -
Location Contig8948: 40805-44159
Sequence    

Annotation

kegg
ID rcu:RCOM_0224460
description grr1, plant, putative
nr
ID XP_002524506.1
description grr1, plant, putative [Ricinus communis]
swissprot
ID Q9SKK0
description EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1
trembl
ID B9SET7
description Grr1, plant, putative OS=Ricinus communis GN=RCOM_0224460 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61718: 40806-44114
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008948_040 0.0 - - grr1, plant, putative [Ricinus communis]
2 Hb_168319_030 0.1483492744 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
3 Hb_000019_060 0.1534985849 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
4 Hb_000366_090 0.1649501228 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32430, mitochondrial [Jatropha curcas]
5 Hb_004375_150 0.1666208549 - - PREDICTED: uncharacterized protein LOC105642574 [Jatropha curcas]
6 Hb_012799_100 0.1669905544 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
7 Hb_027472_170 0.1675589049 - - hypothetical protein POPTR_0007s08080g [Populus trichocarpa]
8 Hb_004128_180 0.1701851426 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
9 Hb_000373_180 0.1742848042 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
10 Hb_000110_320 0.1757213804 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
11 Hb_034406_020 0.1772248223 - - PREDICTED: jmjC domain-containing protein 7 [Jatropha curcas]
12 Hb_019654_090 0.1784725992 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
13 Hb_025557_030 0.1786039351 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
14 Hb_000033_020 0.1790379861 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000117_090 0.1797748441 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
16 Hb_012760_070 0.1813842793 - - protein phosphatase 2c, putative [Ricinus communis]
17 Hb_001437_130 0.1822521854 - - hypothetical protein F383_15788 [Gossypium arboreum]
18 Hb_000009_450 0.1837781741 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
19 Hb_011030_020 0.185029884 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
20 Hb_000264_020 0.1861671947 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_008948_040 Hb_008948_040 Hb_168319_030 Hb_168319_030 Hb_008948_040--Hb_168319_030 Hb_000019_060 Hb_000019_060 Hb_008948_040--Hb_000019_060 Hb_000366_090 Hb_000366_090 Hb_008948_040--Hb_000366_090 Hb_004375_150 Hb_004375_150 Hb_008948_040--Hb_004375_150 Hb_012799_100 Hb_012799_100 Hb_008948_040--Hb_012799_100 Hb_027472_170 Hb_027472_170 Hb_008948_040--Hb_027472_170 Hb_168319_030--Hb_000366_090 Hb_168319_030--Hb_004375_150 Hb_168319_030--Hb_000019_060 Hb_168319_030--Hb_027472_170 Hb_000117_090 Hb_000117_090 Hb_168319_030--Hb_000117_090 Hb_021409_030 Hb_021409_030 Hb_168319_030--Hb_021409_030 Hb_007075_050 Hb_007075_050 Hb_000019_060--Hb_007075_050 Hb_000019_060--Hb_000366_090 Hb_019654_090 Hb_019654_090 Hb_000019_060--Hb_019654_090 Hb_004128_180 Hb_004128_180 Hb_000019_060--Hb_004128_180 Hb_011030_020 Hb_011030_020 Hb_000019_060--Hb_011030_020 Hb_000033_020 Hb_000033_020 Hb_000366_090--Hb_000033_020 Hb_000366_090--Hb_000117_090 Hb_000110_320 Hb_000110_320 Hb_000366_090--Hb_000110_320 Hb_000366_090--Hb_004375_150 Hb_004607_030 Hb_004607_030 Hb_004375_150--Hb_004607_030 Hb_025557_030 Hb_025557_030 Hb_004375_150--Hb_025557_030 Hb_000009_450 Hb_000009_450 Hb_004375_150--Hb_000009_450 Hb_004375_150--Hb_000033_020 Hb_002205_130 Hb_002205_130 Hb_012799_100--Hb_002205_130 Hb_012799_100--Hb_000019_060 Hb_012799_100--Hb_011030_020 Hb_001189_050 Hb_001189_050 Hb_012799_100--Hb_001189_050 Hb_003642_050 Hb_003642_050 Hb_012799_100--Hb_003642_050 Hb_012799_100--Hb_168319_030 Hb_000019_130 Hb_000019_130 Hb_027472_170--Hb_000019_130 Hb_000935_050 Hb_000935_050 Hb_027472_170--Hb_000935_050 Hb_000307_030 Hb_000307_030 Hb_027472_170--Hb_000307_030 Hb_000007_150 Hb_000007_150 Hb_027472_170--Hb_000007_150 Hb_005686_030 Hb_005686_030 Hb_027472_170--Hb_005686_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.6911 52.4605 21.8268 36.8391 31.615 38.7096
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6856 179.529 215.714 39.8945 18.1985

CAGE analysis