Hb_006268_020

Information

Type -
Description -
Location Contig6268: 11783-17914
Sequence    

Annotation

kegg
ID rcu:RCOM_1444740
description cystathionine beta-lyase, putative (EC:4.4.1.1)
nr
ID KDP35744.1
description hypothetical protein JCGZ_10516 [Jatropha curcas]
swissprot
ID P53780
description Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1
trembl
ID A0A067KV98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10516 PE=3 SV=1
Gene Ontology
ID GO:0004121
description cystathionine beta- chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006268_020 0.0 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
2 Hb_052689_010 0.1974784755 - - heat shock cognate protein [Solanum commersonii]
3 Hb_000512_070 0.2041349997 - - PREDICTED: GDSL esterase/lipase At1g71250-like [Jatropha curcas]
4 Hb_000820_050 0.2070722676 - - hypothetical protein EUGRSUZ_H02626 [Eucalyptus grandis]
5 Hb_008760_010 0.20898358 - - berberine bridge enzyme [Hevea brasiliensis]
6 Hb_000115_010 0.2098657667 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
7 Hb_004846_160 0.2184186456 - - -
8 Hb_001008_180 0.2185749137 - - -
9 Hb_000327_160 0.2267406507 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
10 Hb_032496_010 0.2279452622 - - hypothetical protein POPTR_0012s10850g [Populus trichocarpa]
11 Hb_002748_030 0.2342369036 - - nucleotide binding protein, putative [Ricinus communis]
12 Hb_000820_060 0.239481511 - - -
13 Hb_008695_140 0.2422636871 - - Vacuolar protein sorting-associated protein VPS9, putative [Ricinus communis]
14 Hb_024404_020 0.2433796646 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
15 Hb_000856_150 0.2438831232 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
16 Hb_006816_470 0.2473932237 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
17 Hb_008494_050 0.2479090662 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
18 Hb_001971_060 0.252057016 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
19 Hb_002291_010 0.2558785303 - - ring finger protein, putative [Ricinus communis]
20 Hb_000226_080 0.2562299992 - - prephenate dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006268_020 Hb_006268_020 Hb_052689_010 Hb_052689_010 Hb_006268_020--Hb_052689_010 Hb_000512_070 Hb_000512_070 Hb_006268_020--Hb_000512_070 Hb_000820_050 Hb_000820_050 Hb_006268_020--Hb_000820_050 Hb_008760_010 Hb_008760_010 Hb_006268_020--Hb_008760_010 Hb_000115_010 Hb_000115_010 Hb_006268_020--Hb_000115_010 Hb_004846_160 Hb_004846_160 Hb_006268_020--Hb_004846_160 Hb_001916_070 Hb_001916_070 Hb_052689_010--Hb_001916_070 Hb_003688_160 Hb_003688_160 Hb_052689_010--Hb_003688_160 Hb_000251_090 Hb_000251_090 Hb_052689_010--Hb_000251_090 Hb_089206_010 Hb_089206_010 Hb_052689_010--Hb_089206_010 Hb_003032_020 Hb_003032_020 Hb_052689_010--Hb_003032_020 Hb_007820_010 Hb_007820_010 Hb_052689_010--Hb_007820_010 Hb_004103_030 Hb_004103_030 Hb_000512_070--Hb_004103_030 Hb_130194_010 Hb_130194_010 Hb_000512_070--Hb_130194_010 Hb_032496_010 Hb_032496_010 Hb_000512_070--Hb_032496_010 Hb_004881_100 Hb_004881_100 Hb_000512_070--Hb_004881_100 Hb_000512_070--Hb_000251_090 Hb_000820_060 Hb_000820_060 Hb_000820_050--Hb_000820_060 Hb_000820_050--Hb_000115_010 Hb_105328_010 Hb_105328_010 Hb_000820_050--Hb_105328_010 Hb_000032_450 Hb_000032_450 Hb_000820_050--Hb_000032_450 Hb_006472_080 Hb_006472_080 Hb_000820_050--Hb_006472_080 Hb_000130_110 Hb_000130_110 Hb_008760_010--Hb_000130_110 Hb_006153_080 Hb_006153_080 Hb_008760_010--Hb_006153_080 Hb_001195_360 Hb_001195_360 Hb_008760_010--Hb_001195_360 Hb_000856_150 Hb_000856_150 Hb_008760_010--Hb_000856_150 Hb_000239_020 Hb_000239_020 Hb_008760_010--Hb_000239_020 Hb_002783_110 Hb_002783_110 Hb_008760_010--Hb_002783_110 Hb_000115_010--Hb_000820_060 Hb_000115_010--Hb_000032_450 Hb_000173_440 Hb_000173_440 Hb_000115_010--Hb_000173_440 Hb_001006_220 Hb_001006_220 Hb_000115_010--Hb_001006_220 Hb_000226_080 Hb_000226_080 Hb_004846_160--Hb_000226_080 Hb_005408_050 Hb_005408_050 Hb_004846_160--Hb_005408_050 Hb_004846_160--Hb_000239_020 Hb_004846_160--Hb_052689_010 Hb_024404_020 Hb_024404_020 Hb_004846_160--Hb_024404_020 Hb_004374_120 Hb_004374_120 Hb_004846_160--Hb_004374_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.188295 0.441432 0.46133 0.465027 0.0869816 0.354382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.168565 0.159132 2.48489 1.78022 0.885206

CAGE analysis