Hb_000173_440

Information

Type -
Description -
Location Contig173: 325561-335419
Sequence    

Annotation

kegg
ID yli:YALI0B05280g
description YALI0B05280p
nr
ID XP_500523.1
description YALI0B05280p [Yarrowia lipolytica]
swissprot
ID -
description -
trembl
ID Q6CFN9
description Chromosome B complete sequence OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=YALI0_B05280g PE=4 SV=1
Gene Ontology
ID GO:0006810
description bi1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16471: 333732-334337
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_440 0.0 - - YALI0B05280p [Yarrowia lipolytica]
2 Hb_000115_010 0.2088840654 - - 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]
3 Hb_000450_150 0.2333949758 - - Anthocyanin 5-aromatic acyltransferase, putative [Ricinus communis]
4 Hb_001006_220 0.2357502355 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
5 Hb_000364_160 0.2519227024 - - PREDICTED: uncharacterized protein LOC105639754 [Jatropha curcas]
6 Hb_002659_030 0.2564375811 - - copper transport protein atox1, putative [Ricinus communis]
7 Hb_056199_030 0.2635394155 - - PREDICTED: purine permease 3-like isoform X2 [Gossypium raimondii]
8 Hb_033413_010 0.2748833221 - - Reticuline oxidase precursor, putative [Ricinus communis]
9 Hb_004846_160 0.2757149765 - - -
10 Hb_026889_040 0.2799469876 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1 [Jatropha curcas]
11 Hb_000032_450 0.2846120375 - - PREDICTED: GDSL esterase/lipase At1g71691 [Jatropha curcas]
12 Hb_022593_010 0.2846815509 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
13 Hb_187677_010 0.2886784474 - - -
14 Hb_001008_180 0.2888279425 - - -
15 Hb_001930_040 0.2912924609 - - PREDICTED: serine acetyltransferase 1, chloroplastic-like [Beta vulgaris subsp. vulgaris]
16 Hb_006816_470 0.2921177278 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
17 Hb_008760_010 0.2925206995 - - berberine bridge enzyme [Hevea brasiliensis]
18 Hb_006268_020 0.2967442917 - - hypothetical protein JCGZ_10516 [Jatropha curcas]
19 Hb_001481_130 0.2990061056 - - conserved hypothetical protein [Ricinus communis]
20 Hb_161010_010 0.3017014588 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_000173_440 Hb_000173_440 Hb_000115_010 Hb_000115_010 Hb_000173_440--Hb_000115_010 Hb_000450_150 Hb_000450_150 Hb_000173_440--Hb_000450_150 Hb_001006_220 Hb_001006_220 Hb_000173_440--Hb_001006_220 Hb_000364_160 Hb_000364_160 Hb_000173_440--Hb_000364_160 Hb_002659_030 Hb_002659_030 Hb_000173_440--Hb_002659_030 Hb_056199_030 Hb_056199_030 Hb_000173_440--Hb_056199_030 Hb_000820_050 Hb_000820_050 Hb_000115_010--Hb_000820_050 Hb_000820_060 Hb_000820_060 Hb_000115_010--Hb_000820_060 Hb_000032_450 Hb_000032_450 Hb_000115_010--Hb_000032_450 Hb_006268_020 Hb_006268_020 Hb_000115_010--Hb_006268_020 Hb_000115_010--Hb_001006_220 Hb_000450_150--Hb_000115_010 Hb_001045_110 Hb_001045_110 Hb_000450_150--Hb_001045_110 Hb_000450_150--Hb_001006_220 Hb_025311_020 Hb_025311_020 Hb_000450_150--Hb_025311_020 Hb_000450_150--Hb_000820_050 Hb_033413_010 Hb_033413_010 Hb_001006_220--Hb_033413_010 Hb_026889_040 Hb_026889_040 Hb_001006_220--Hb_026889_040 Hb_088327_010 Hb_088327_010 Hb_001006_220--Hb_088327_010 Hb_091349_010 Hb_091349_010 Hb_001006_220--Hb_091349_010 Hb_001008_180 Hb_001008_180 Hb_001006_220--Hb_001008_180 Hb_022593_010 Hb_022593_010 Hb_000364_160--Hb_022593_010 Hb_002783_110 Hb_002783_110 Hb_000364_160--Hb_002783_110 Hb_006816_470 Hb_006816_470 Hb_000364_160--Hb_006816_470 Hb_001242_080 Hb_001242_080 Hb_000364_160--Hb_001242_080 Hb_000364_160--Hb_026889_040 Hb_002876_270 Hb_002876_270 Hb_000364_160--Hb_002876_270 Hb_029920_020 Hb_029920_020 Hb_002659_030--Hb_029920_020 Hb_002320_080 Hb_002320_080 Hb_002659_030--Hb_002320_080 Hb_000389_050 Hb_000389_050 Hb_002659_030--Hb_000389_050 Hb_016564_010 Hb_016564_010 Hb_002659_030--Hb_016564_010 Hb_000336_230 Hb_000336_230 Hb_002659_030--Hb_000336_230 Hb_011472_010 Hb_011472_010 Hb_002659_030--Hb_011472_010 Hb_012447_010 Hb_012447_010 Hb_056199_030--Hb_012447_010 Hb_000144_040 Hb_000144_040 Hb_056199_030--Hb_000144_040 Hb_007181_020 Hb_007181_020 Hb_056199_030--Hb_007181_020 Hb_010883_130 Hb_010883_130 Hb_056199_030--Hb_010883_130 Hb_001304_120 Hb_001304_120 Hb_056199_030--Hb_001304_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0536347 0.0235789 0.35568 0.0308581 0.0540486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.110479 0.620139 0.242904 0.23009

CAGE analysis