Hb_000144_040

Information

Type -
Description -
Location Contig144: 142639-143698
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06790g
description POPTRDRAFT_762193; hypothetical protein
nr
ID XP_002308078.2
description hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
swissprot
ID Q9SJN2
description Pentatricopeptide repeat-containing protein At2g36240 OS=Arabidopsis thaliana GN=At2g36240 PE=2 SV=1
trembl
ID B9HAJ8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s06790g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000144_040 0.0 - - hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
2 Hb_001304_120 0.2362030781 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
3 Hb_001045_110 0.2421440496 transcription factor TF Family: M-type flowering locus C-like protein [Juglans regia]
4 Hb_001188_120 0.2525308417 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
5 Hb_076795_010 0.2528566891 - - hypothetical protein POPTR_0001s07680g, partial [Populus trichocarpa]
6 Hb_012098_190 0.2546232974 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
7 Hb_056199_030 0.261847255 - - PREDICTED: purine permease 3-like isoform X2 [Gossypium raimondii]
8 Hb_181026_010 0.2685210797 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
9 Hb_000964_070 0.2731072347 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
10 Hb_002791_020 0.2754314663 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
11 Hb_142570_010 0.2893823269 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
12 Hb_005167_020 0.2906855034 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
13 Hb_000460_070 0.2958758326 - - luminal binding protein [Gossypium hirsutum]
14 Hb_005803_040 0.2984804571 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
15 Hb_161010_010 0.3005065855 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
16 Hb_012447_010 0.3014897368 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_008730_010 0.3028433149 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_012753_010 0.3075893775 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_007181_020 0.3082799698 - - PREDICTED: uncharacterized protein At4g04980-like [Populus euphratica]
20 Hb_006816_470 0.3083544151 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000144_040 Hb_000144_040 Hb_001304_120 Hb_001304_120 Hb_000144_040--Hb_001304_120 Hb_001045_110 Hb_001045_110 Hb_000144_040--Hb_001045_110 Hb_001188_120 Hb_001188_120 Hb_000144_040--Hb_001188_120 Hb_076795_010 Hb_076795_010 Hb_000144_040--Hb_076795_010 Hb_012098_190 Hb_012098_190 Hb_000144_040--Hb_012098_190 Hb_056199_030 Hb_056199_030 Hb_000144_040--Hb_056199_030 Hb_005007_040 Hb_005007_040 Hb_001304_120--Hb_005007_040 Hb_000065_050 Hb_000065_050 Hb_001304_120--Hb_000065_050 Hb_012295_020 Hb_012295_020 Hb_001304_120--Hb_012295_020 Hb_012071_010 Hb_012071_010 Hb_001304_120--Hb_012071_010 Hb_002092_040 Hb_002092_040 Hb_001304_120--Hb_002092_040 Hb_000115_010 Hb_000115_010 Hb_001045_110--Hb_000115_010 Hb_000450_150 Hb_000450_150 Hb_001045_110--Hb_000450_150 Hb_000820_050 Hb_000820_050 Hb_001045_110--Hb_000820_050 Hb_025311_020 Hb_025311_020 Hb_001045_110--Hb_025311_020 Hb_000820_060 Hb_000820_060 Hb_001045_110--Hb_000820_060 Hb_012753_010 Hb_012753_010 Hb_001188_120--Hb_012753_010 Hb_003186_040 Hb_003186_040 Hb_001188_120--Hb_003186_040 Hb_002791_020 Hb_002791_020 Hb_001188_120--Hb_002791_020 Hb_085083_020 Hb_085083_020 Hb_001188_120--Hb_085083_020 Hb_001188_120--Hb_076795_010 Hb_185058_020 Hb_185058_020 Hb_001188_120--Hb_185058_020 Hb_000031_350 Hb_000031_350 Hb_076795_010--Hb_000031_350 Hb_076795_010--Hb_012098_190 Hb_172388_010 Hb_172388_010 Hb_076795_010--Hb_172388_010 Hb_008730_010 Hb_008730_010 Hb_076795_010--Hb_008730_010 Hb_002360_020 Hb_002360_020 Hb_012098_190--Hb_002360_020 Hb_012098_190--Hb_001188_120 Hb_181026_010 Hb_181026_010 Hb_012098_190--Hb_181026_010 Hb_012098_190--Hb_000031_350 Hb_012447_010 Hb_012447_010 Hb_056199_030--Hb_012447_010 Hb_000173_440 Hb_000173_440 Hb_056199_030--Hb_000173_440 Hb_007181_020 Hb_007181_020 Hb_056199_030--Hb_007181_020 Hb_010883_130 Hb_010883_130 Hb_056199_030--Hb_010883_130 Hb_056199_030--Hb_001304_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0352174 0.023493 0.0422072 0.126091 0.0544752 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.101423 0.644103 0.287033 0.714971

CAGE analysis