Hb_012098_190

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig12098: 133935-136741
Sequence    

Annotation

kegg
ID pop:POPTR_0001s26900g
description POPTRDRAFT_549273; NBS-LRR resistance gene-like protein ARGH30
nr
ID XP_012084587.1
description PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
swissprot
ID Q9LRR4
description Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1
trembl
ID B9GF31
description NBS-LRR resistance gene-like protein ARGH30 OS=Populus trichocarpa GN=POPTR_0001s26900g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06467: 134231-134549
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012098_190 0.0 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
2 Hb_076795_010 0.1987329751 - - hypothetical protein POPTR_0001s07680g, partial [Populus trichocarpa]
3 Hb_002360_020 0.2106776068 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_001188_120 0.2465654937 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
5 Hb_000144_040 0.2546232974 - - hypothetical protein POPTR_0006s06790g [Populus trichocarpa]
6 Hb_181026_010 0.2553502719 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
7 Hb_000031_350 0.2746061627 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic isoform X2 [Cucumis melo]
8 Hb_000783_030 0.2875932519 - - tfiif-alpha, putative [Ricinus communis]
9 Hb_172388_010 0.2875953174 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
10 Hb_005439_010 0.2915373775 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
11 Hb_001304_120 0.2944209976 transcription factor TF Family: WRKY WRKY protein [Hevea brasiliensis]
12 Hb_005511_090 0.2954416736 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
13 Hb_003197_060 0.2971013814 - - hypothetical protein POPTR_0015s11900g [Populus trichocarpa]
14 Hb_008730_010 0.3015310166 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_005007_040 0.3049547139 - - hypothetical protein VITISV_032357 [Vitis vinifera]
16 Hb_002047_020 0.3052876227 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
17 Hb_002791_020 0.3057693257 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
18 Hb_000460_070 0.3057880472 - - luminal binding protein [Gossypium hirsutum]
19 Hb_001045_110 0.3066292096 transcription factor TF Family: M-type flowering locus C-like protein [Juglans regia]
20 Hb_077935_010 0.3071004847 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_012098_190 Hb_012098_190 Hb_076795_010 Hb_076795_010 Hb_012098_190--Hb_076795_010 Hb_002360_020 Hb_002360_020 Hb_012098_190--Hb_002360_020 Hb_001188_120 Hb_001188_120 Hb_012098_190--Hb_001188_120 Hb_000144_040 Hb_000144_040 Hb_012098_190--Hb_000144_040 Hb_181026_010 Hb_181026_010 Hb_012098_190--Hb_181026_010 Hb_000031_350 Hb_000031_350 Hb_012098_190--Hb_000031_350 Hb_076795_010--Hb_000031_350 Hb_076795_010--Hb_001188_120 Hb_076795_010--Hb_000144_040 Hb_172388_010 Hb_172388_010 Hb_076795_010--Hb_172388_010 Hb_008730_010 Hb_008730_010 Hb_076795_010--Hb_008730_010 Hb_050334_010 Hb_050334_010 Hb_002360_020--Hb_050334_010 Hb_001519_210 Hb_001519_210 Hb_002360_020--Hb_001519_210 Hb_000307_230 Hb_000307_230 Hb_002360_020--Hb_000307_230 Hb_032531_010 Hb_032531_010 Hb_002360_020--Hb_032531_010 Hb_054467_010 Hb_054467_010 Hb_002360_020--Hb_054467_010 Hb_012753_010 Hb_012753_010 Hb_001188_120--Hb_012753_010 Hb_003186_040 Hb_003186_040 Hb_001188_120--Hb_003186_040 Hb_002791_020 Hb_002791_020 Hb_001188_120--Hb_002791_020 Hb_085083_020 Hb_085083_020 Hb_001188_120--Hb_085083_020 Hb_185058_020 Hb_185058_020 Hb_001188_120--Hb_185058_020 Hb_001304_120 Hb_001304_120 Hb_000144_040--Hb_001304_120 Hb_001045_110 Hb_001045_110 Hb_000144_040--Hb_001045_110 Hb_000144_040--Hb_001188_120 Hb_056199_030 Hb_056199_030 Hb_000144_040--Hb_056199_030 Hb_000460_070 Hb_000460_070 Hb_181026_010--Hb_000460_070 Hb_006816_470 Hb_006816_470 Hb_181026_010--Hb_006816_470 Hb_011386_020 Hb_011386_020 Hb_181026_010--Hb_011386_020 Hb_005167_020 Hb_005167_020 Hb_181026_010--Hb_005167_020 Hb_004650_060 Hb_004650_060 Hb_181026_010--Hb_004650_060 Hb_004339_030 Hb_004339_030 Hb_181026_010--Hb_004339_030 Hb_000031_350--Hb_085083_020 Hb_005439_010 Hb_005439_010 Hb_000031_350--Hb_005439_010 Hb_000101_150 Hb_000101_150 Hb_000031_350--Hb_000101_150 Hb_000031_350--Hb_001188_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.00620664 0.0114587 0.017016 0.119691 0.0263399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0512903 0.0538134 0.436271 0.30979 0.600936

CAGE analysis