Hb_000031_350

Information

Type -
Description -
Location Contig31: 287712-290433
Sequence    

Annotation

kegg
ID cmo:103488367
description uncharacterized protein At1g32220, chloroplastic
nr
ID XP_008445292.1
description PREDICTED: uncharacterized protein At1g32220, chloroplastic isoform X2 [Cucumis melo]
swissprot
ID Q9FVR6
description Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=2 SV=1
trembl
ID A0A0A0LML0
description Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383350 PE=4 SV=1
Gene Ontology
ID GO:0005886
description catalytic coenzyme binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_350 0.0 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic isoform X2 [Cucumis melo]
2 Hb_076795_010 0.1973602591 - - hypothetical protein POPTR_0001s07680g, partial [Populus trichocarpa]
3 Hb_012098_190 0.2746061627 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
4 Hb_085083_020 0.277929361 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
5 Hb_005439_010 0.2856685675 - - PREDICTED: putative ribonuclease H protein At1g65750 [Beta vulgaris subsp. vulgaris]
6 Hb_000101_150 0.2903705969 - - -
7 Hb_001188_120 0.295703298 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
8 Hb_008730_010 0.2965029079 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_100288_010 0.3020299166 - - PREDICTED: uncharacterized protein LOC104901272 [Beta vulgaris subsp. vulgaris]
10 Hb_001496_080 0.3023333905 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
11 Hb_005511_090 0.3024519656 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 C isoform X1 [Jatropha curcas]
12 Hb_049275_010 0.3082428576 - - PREDICTED: F-box/LRR-repeat protein 4-like [Populus euphratica]
13 Hb_003197_060 0.309754002 - - hypothetical protein POPTR_0015s11900g [Populus trichocarpa]
14 Hb_015978_050 0.3109430956 - - -
15 Hb_002047_020 0.3133082874 - - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis]
16 Hb_170156_010 0.3229984342 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_001135_280 0.3245810173 - - -
18 Hb_020763_010 0.3250299533 - - polyamine oxidase, putative [Ricinus communis]
19 Hb_014548_030 0.3284662374 - - PREDICTED: uncharacterized protein LOC104897580 [Beta vulgaris subsp. vulgaris]
20 Hb_012305_090 0.3291107334 - - hypothetical protein VITISV_018166 [Vitis vinifera]

Gene co-expression network

sample Hb_000031_350 Hb_000031_350 Hb_076795_010 Hb_076795_010 Hb_000031_350--Hb_076795_010 Hb_012098_190 Hb_012098_190 Hb_000031_350--Hb_012098_190 Hb_085083_020 Hb_085083_020 Hb_000031_350--Hb_085083_020 Hb_005439_010 Hb_005439_010 Hb_000031_350--Hb_005439_010 Hb_000101_150 Hb_000101_150 Hb_000031_350--Hb_000101_150 Hb_001188_120 Hb_001188_120 Hb_000031_350--Hb_001188_120 Hb_076795_010--Hb_012098_190 Hb_076795_010--Hb_001188_120 Hb_000144_040 Hb_000144_040 Hb_076795_010--Hb_000144_040 Hb_172388_010 Hb_172388_010 Hb_076795_010--Hb_172388_010 Hb_008730_010 Hb_008730_010 Hb_076795_010--Hb_008730_010 Hb_002360_020 Hb_002360_020 Hb_012098_190--Hb_002360_020 Hb_012098_190--Hb_001188_120 Hb_012098_190--Hb_000144_040 Hb_181026_010 Hb_181026_010 Hb_012098_190--Hb_181026_010 Hb_003175_110 Hb_003175_110 Hb_085083_020--Hb_003175_110 Hb_000964_070 Hb_000964_070 Hb_085083_020--Hb_000964_070 Hb_066487_010 Hb_066487_010 Hb_085083_020--Hb_066487_010 Hb_063943_010 Hb_063943_010 Hb_085083_020--Hb_063943_010 Hb_005523_010 Hb_005523_010 Hb_085083_020--Hb_005523_010 Hb_090530_010 Hb_090530_010 Hb_085083_020--Hb_090530_010 Hb_043792_020 Hb_043792_020 Hb_005439_010--Hb_043792_020 Hb_001519_210 Hb_001519_210 Hb_005439_010--Hb_001519_210 Hb_128531_010 Hb_128531_010 Hb_005439_010--Hb_128531_010 Hb_159938_010 Hb_159938_010 Hb_005439_010--Hb_159938_010 Hb_095835_010 Hb_095835_010 Hb_005439_010--Hb_095835_010 Hb_155556_010 Hb_155556_010 Hb_005439_010--Hb_155556_010 Hb_000101_150--Hb_008730_010 Hb_170156_010 Hb_170156_010 Hb_000101_150--Hb_170156_010 Hb_000101_150--Hb_076795_010 Hb_043708_010 Hb_043708_010 Hb_000101_150--Hb_043708_010 Hb_022132_020 Hb_022132_020 Hb_000101_150--Hb_022132_020 Hb_012753_010 Hb_012753_010 Hb_001188_120--Hb_012753_010 Hb_003186_040 Hb_003186_040 Hb_001188_120--Hb_003186_040 Hb_002791_020 Hb_002791_020 Hb_001188_120--Hb_002791_020 Hb_001188_120--Hb_085083_020 Hb_185058_020 Hb_185058_020 Hb_001188_120--Hb_185058_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0902487 0 0.0343957 0 0.393663 0.160977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.574393 0.473932 1.27071

CAGE analysis