Hb_022132_020

Information

Type -
Description -
Location Contig22132: 8453-8866
Sequence    

Annotation

kegg
ID -
description -
nr
ID EMS63787.1
description hypothetical protein TRIUR3_12476 [Triticum urartu]
swissprot
ID -
description -
trembl
ID M7ZUI9
description Uncharacterized protein OS=Triticum urartu GN=TRIUR3_12476 PE=4 SV=1
Gene Ontology
ID GO:0003676
description werner syndrome-like exonuclease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_022132_020 0.0 - - hypothetical protein TRIUR3_12476 [Triticum urartu]
2 Hb_078780_010 0.2749040433 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_167183_010 0.2832878717 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
4 Hb_000101_150 0.3083251518 - - -
5 Hb_009393_070 0.312769398 - - PREDICTED: uncharacterized protein At2g29880-like [Populus euphratica]
6 Hb_011478_010 0.31913794 - - -
7 Hb_003711_030 0.3221707097 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
8 Hb_000172_130 0.322642672 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
9 Hb_000165_150 0.3357130994 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
10 Hb_170156_010 0.3388420225 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_008730_010 0.347322393 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_028998_010 0.3520549427 - - -
13 Hb_001369_430 0.3520558192 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
14 Hb_000110_110 0.3520559428 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
15 Hb_089844_010 0.3520567154 - - -
16 Hb_026405_010 0.3520574033 - - PREDICTED: uncharacterized protein LOC104107896 [Nicotiana tomentosiformis]
17 Hb_009577_010 0.352057568 - - -
18 Hb_001168_090 0.3520584463 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]
19 Hb_181107_010 0.35205979 - - hypothetical protein, partial [Pseudomonas tolaasii]
20 Hb_000029_430 0.3520613672 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_022132_020 Hb_022132_020 Hb_078780_010 Hb_078780_010 Hb_022132_020--Hb_078780_010 Hb_167183_010 Hb_167183_010 Hb_022132_020--Hb_167183_010 Hb_000101_150 Hb_000101_150 Hb_022132_020--Hb_000101_150 Hb_009393_070 Hb_009393_070 Hb_022132_020--Hb_009393_070 Hb_011478_010 Hb_011478_010 Hb_022132_020--Hb_011478_010 Hb_003711_030 Hb_003711_030 Hb_022132_020--Hb_003711_030 Hb_078780_010--Hb_009393_070 Hb_141425_010 Hb_141425_010 Hb_078780_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_078780_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_078780_010--Hb_123396_010 Hb_009268_030 Hb_009268_030 Hb_078780_010--Hb_009268_030 Hb_167183_010--Hb_011478_010 Hb_167183_010--Hb_003711_030 Hb_167183_010--Hb_141425_010 Hb_167183_010--Hb_000987_110 Hb_167183_010--Hb_123396_010 Hb_167183_010--Hb_009268_030 Hb_008730_010 Hb_008730_010 Hb_000101_150--Hb_008730_010 Hb_170156_010 Hb_170156_010 Hb_000101_150--Hb_170156_010 Hb_076795_010 Hb_076795_010 Hb_000101_150--Hb_076795_010 Hb_043708_010 Hb_043708_010 Hb_000101_150--Hb_043708_010 Hb_000031_350 Hb_000031_350 Hb_000101_150--Hb_000031_350 Hb_009393_070--Hb_009268_030 Hb_170973_010 Hb_170973_010 Hb_009393_070--Hb_170973_010 Hb_009393_070--Hb_141425_010 Hb_009393_070--Hb_000987_110 Hb_009393_070--Hb_123396_010 Hb_011478_010--Hb_003711_030 Hb_057451_040 Hb_057451_040 Hb_011478_010--Hb_057451_040 Hb_000268_100 Hb_000268_100 Hb_011478_010--Hb_000268_100 Hb_002025_090 Hb_002025_090 Hb_011478_010--Hb_002025_090 Hb_002122_020 Hb_002122_020 Hb_011478_010--Hb_002122_020 Hb_003711_030--Hb_057451_040 Hb_003711_030--Hb_000268_100 Hb_003711_030--Hb_002025_090 Hb_003711_030--Hb_002122_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0743997 0.0716965
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.237155 0 0.260669

CAGE analysis