Hb_078780_010

Information

Type -
Description -
Location Contig78780: 91-1372
Sequence    

Annotation

kegg
ID pda:103700049
description uncharacterized LOC103700049
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078780_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_009393_070 0.07768582 - - PREDICTED: uncharacterized protein At2g29880-like [Populus euphratica]
3 Hb_022132_020 0.2749040433 - - hypothetical protein TRIUR3_12476 [Triticum urartu]
4 Hb_141425_010 0.2809175239 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
5 Hb_000987_110 0.2809218355 - - PREDICTED: uncharacterized protein LOC104902780 [Beta vulgaris subsp. vulgaris]
6 Hb_123396_010 0.2809879232 - - hypothetical protein AMTR_s00510p00011440 [Amborella trichopoda]
7 Hb_009268_030 0.2902619763 - - ribosomal protein S7 [Piper cenocladum]
8 Hb_170973_010 0.2902900571 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
9 Hb_004124_010 0.3047505193 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
10 Hb_004078_030 0.3119765661 - - Putative polyprotein, identical [Solanum demissum]
11 Hb_004019_060 0.3119854504 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
12 Hb_008601_020 0.3119879846 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_004989_010 0.3120091409 - - retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa Japonica Group]
14 Hb_017184_010 0.31224668 - - PREDICTED: uncharacterized protein LOC105778857 [Gossypium raimondii]
15 Hb_001952_080 0.3122904064 - - PREDICTED: uncharacterized protein LOC105042236 isoform X2 [Elaeis guineensis]
16 Hb_039316_010 0.3123120166 - - PREDICTED: uncharacterized protein LOC105771917 [Gossypium raimondii]
17 Hb_113614_010 0.3123241042 - - hypothetical protein VITISV_001308 [Vitis vinifera]
18 Hb_000029_430 0.3123512305 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic-like [Jatropha curcas]
19 Hb_181107_010 0.3124748465 - - hypothetical protein, partial [Pseudomonas tolaasii]
20 Hb_001168_090 0.3125972034 - - PREDICTED: uncharacterized protein LOC104246050 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_078780_010 Hb_078780_010 Hb_009393_070 Hb_009393_070 Hb_078780_010--Hb_009393_070 Hb_022132_020 Hb_022132_020 Hb_078780_010--Hb_022132_020 Hb_141425_010 Hb_141425_010 Hb_078780_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_078780_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_078780_010--Hb_123396_010 Hb_009268_030 Hb_009268_030 Hb_078780_010--Hb_009268_030 Hb_009393_070--Hb_009268_030 Hb_170973_010 Hb_170973_010 Hb_009393_070--Hb_170973_010 Hb_009393_070--Hb_141425_010 Hb_009393_070--Hb_000987_110 Hb_009393_070--Hb_123396_010 Hb_167183_010 Hb_167183_010 Hb_022132_020--Hb_167183_010 Hb_000101_150 Hb_000101_150 Hb_022132_020--Hb_000101_150 Hb_022132_020--Hb_009393_070 Hb_011478_010 Hb_011478_010 Hb_022132_020--Hb_011478_010 Hb_003711_030 Hb_003711_030 Hb_022132_020--Hb_003711_030 Hb_141425_010--Hb_000987_110 Hb_141425_010--Hb_123396_010 Hb_141425_010--Hb_009268_030 Hb_141425_010--Hb_170973_010 Hb_004124_010 Hb_004124_010 Hb_141425_010--Hb_004124_010 Hb_004078_030 Hb_004078_030 Hb_141425_010--Hb_004078_030 Hb_000987_110--Hb_123396_010 Hb_000987_110--Hb_009268_030 Hb_000987_110--Hb_170973_010 Hb_000987_110--Hb_004124_010 Hb_000987_110--Hb_004078_030 Hb_123396_010--Hb_009268_030 Hb_123396_010--Hb_170973_010 Hb_123396_010--Hb_004124_010 Hb_123396_010--Hb_004078_030 Hb_009268_030--Hb_170973_010 Hb_009268_030--Hb_004124_010 Hb_001124_170 Hb_001124_170 Hb_009268_030--Hb_001124_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0407755 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0721707 0 0.16044

CAGE analysis