Hb_003711_030

Information

Type -
Description -
Location Contig3711: 39061-44003
Sequence    

Annotation

kegg
ID cit:102621950
description uncharacterized LOC102621950
nr
ID XP_006494539.1
description PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID F6GZ60
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0199g00140 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38056: 37300-84711 , PASA_asmbl_38057: 40687-41117
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003711_030 0.0 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
2 Hb_011478_010 0.0309326102 - - -
3 Hb_057451_040 0.185914414 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_167183_010 0.1917325308 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_000268_100 0.21998976 - - -
6 Hb_002025_090 0.2254408643 - - unnamed protein product [Coffea canephora]
7 Hb_002122_020 0.2769316496 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
8 Hb_143769_010 0.2918785554 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1 [Jatropha curcas]
9 Hb_002869_070 0.2937670646 - - -
10 Hb_004212_040 0.2940489943 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_019656_010 0.2974201163 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_006933_010 0.3009324736 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_004124_010 0.3018472684 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_000172_130 0.3033451183 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
15 Hb_154997_010 0.3134017396 - - hypothetical protein POPTR_0001s43680g, partial [Populus trichocarpa]
16 Hb_106815_010 0.314885317 - - hypothetical protein, conserved [Eimeria acervulina]
17 Hb_000165_150 0.3168335253 - - PREDICTED: pistil-specific extensin-like protein [Jatropha curcas]
18 Hb_050334_010 0.3192986907 - - -
19 Hb_171685_030 0.3204455004 - - URF-1 [Citrullus lanatus]
20 Hb_006157_050 0.3207950907 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_003711_030 Hb_003711_030 Hb_011478_010 Hb_011478_010 Hb_003711_030--Hb_011478_010 Hb_057451_040 Hb_057451_040 Hb_003711_030--Hb_057451_040 Hb_167183_010 Hb_167183_010 Hb_003711_030--Hb_167183_010 Hb_000268_100 Hb_000268_100 Hb_003711_030--Hb_000268_100 Hb_002025_090 Hb_002025_090 Hb_003711_030--Hb_002025_090 Hb_002122_020 Hb_002122_020 Hb_003711_030--Hb_002122_020 Hb_011478_010--Hb_167183_010 Hb_011478_010--Hb_057451_040 Hb_011478_010--Hb_000268_100 Hb_011478_010--Hb_002025_090 Hb_011478_010--Hb_002122_020 Hb_057451_040--Hb_000268_100 Hb_115656_010 Hb_115656_010 Hb_057451_040--Hb_115656_010 Hb_004212_040 Hb_004212_040 Hb_057451_040--Hb_004212_040 Hb_057451_040--Hb_002025_090 Hb_141425_010 Hb_141425_010 Hb_167183_010--Hb_141425_010 Hb_000987_110 Hb_000987_110 Hb_167183_010--Hb_000987_110 Hb_123396_010 Hb_123396_010 Hb_167183_010--Hb_123396_010 Hb_009268_030 Hb_009268_030 Hb_167183_010--Hb_009268_030 Hb_027357_010 Hb_027357_010 Hb_000268_100--Hb_027357_010 Hb_171685_040 Hb_171685_040 Hb_000268_100--Hb_171685_040 Hb_171685_030 Hb_171685_030 Hb_000268_100--Hb_171685_030 Hb_002025_090--Hb_115656_010 Hb_002025_090--Hb_000268_100 Hb_030370_010 Hb_030370_010 Hb_002025_090--Hb_030370_010 Hb_088410_010 Hb_088410_010 Hb_002122_020--Hb_088410_010 Hb_033623_040 Hb_033623_040 Hb_002122_020--Hb_033623_040 Hb_002473_140 Hb_002473_140 Hb_002122_020--Hb_002473_140 Hb_006157_050 Hb_006157_050 Hb_002122_020--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_002122_020--Hb_065943_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.044017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0676967 0.0147036 0.15054

CAGE analysis