Hb_002122_020

Information

Type -
Description -
Location Contig2122: 14648-16076
Sequence    

Annotation

kegg
ID egr:104417190
description putative disease resistance protein RGA3
nr
ID XP_012072753.1
description PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
swissprot
ID O82500
description Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1
trembl
ID A0A067KNB2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07831 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22000: 13240-13932
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002122_020 0.0 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
2 Hb_088410_010 0.2000876229 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
3 Hb_033623_040 0.213840937 - - JHL22C18.10 [Jatropha curcas]
4 Hb_002473_140 0.2162820629 - - -
5 Hb_006157_050 0.2563557268 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_065943_010 0.2598982954 - - -
7 Hb_011478_010 0.260048603 - - -
8 Hb_002869_070 0.2665214141 - - -
9 Hb_099723_010 0.2665925157 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
10 Hb_000940_190 0.2684887799 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
11 Hb_106815_010 0.2734353568 - - hypothetical protein, conserved [Eimeria acervulina]
12 Hb_167183_010 0.2744108953 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_003711_030 0.2769316496 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
14 Hb_004124_010 0.2772492616 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
15 Hb_002493_010 0.2788605993 - - -
16 Hb_171685_030 0.2802431815 - - URF-1 [Citrullus lanatus]
17 Hb_004212_040 0.2807323388 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_050334_010 0.2880343906 - - -
19 Hb_004078_030 0.2883516808 - - Putative polyprotein, identical [Solanum demissum]
20 Hb_004019_060 0.2883550364 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]

Gene co-expression network

sample Hb_002122_020 Hb_002122_020 Hb_088410_010 Hb_088410_010 Hb_002122_020--Hb_088410_010 Hb_033623_040 Hb_033623_040 Hb_002122_020--Hb_033623_040 Hb_002473_140 Hb_002473_140 Hb_002122_020--Hb_002473_140 Hb_006157_050 Hb_006157_050 Hb_002122_020--Hb_006157_050 Hb_065943_010 Hb_065943_010 Hb_002122_020--Hb_065943_010 Hb_011478_010 Hb_011478_010 Hb_002122_020--Hb_011478_010 Hb_088410_010--Hb_002473_140 Hb_159938_010 Hb_159938_010 Hb_088410_010--Hb_159938_010 Hb_002869_070 Hb_002869_070 Hb_088410_010--Hb_002869_070 Hb_050334_010 Hb_050334_010 Hb_088410_010--Hb_050334_010 Hb_142570_010 Hb_142570_010 Hb_088410_010--Hb_142570_010 Hb_002493_010 Hb_002493_010 Hb_033623_040--Hb_002493_010 Hb_017184_010 Hb_017184_010 Hb_033623_040--Hb_017184_010 Hb_001952_080 Hb_001952_080 Hb_033623_040--Hb_001952_080 Hb_004989_010 Hb_004989_010 Hb_033623_040--Hb_004989_010 Hb_039316_010 Hb_039316_010 Hb_033623_040--Hb_039316_010 Hb_002473_140--Hb_159938_010 Hb_002473_140--Hb_002869_070 Hb_002473_140--Hb_050334_010 Hb_001519_210 Hb_001519_210 Hb_002473_140--Hb_001519_210 Hb_154997_010 Hb_154997_010 Hb_002473_140--Hb_154997_010 Hb_006157_050--Hb_065943_010 Hb_099723_010 Hb_099723_010 Hb_006157_050--Hb_099723_010 Hb_000940_190 Hb_000940_190 Hb_006157_050--Hb_000940_190 Hb_032531_010 Hb_032531_010 Hb_006157_050--Hb_032531_010 Hb_006157_050--Hb_050334_010 Hb_006157_050--Hb_002869_070 Hb_065943_010--Hb_099723_010 Hb_065943_010--Hb_000940_190 Hb_065943_010--Hb_032531_010 Hb_065943_010--Hb_050334_010 Hb_065943_010--Hb_002869_070 Hb_003711_030 Hb_003711_030 Hb_011478_010--Hb_003711_030 Hb_167183_010 Hb_167183_010 Hb_011478_010--Hb_167183_010 Hb_057451_040 Hb_057451_040 Hb_011478_010--Hb_057451_040 Hb_000268_100 Hb_000268_100 Hb_011478_010--Hb_000268_100 Hb_002025_090 Hb_002025_090 Hb_011478_010--Hb_002025_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.187741 0.0156453 0 0.0961437
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.938867 0.108185 1.32273

CAGE analysis