Hb_142570_010

Information

Type -
Description -
Location Contig142570: 72-1154
Sequence    

Annotation

kegg
ID bvg:104907573
description uncharacterized LOC104907573
nr
ID XP_010694817.1
description PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID E2DN01
description Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142570_010 0.0 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
2 Hb_002473_140 0.1893831429 - - -
3 Hb_159938_010 0.1906614122 - - phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_041813_050 0.1989815167 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
5 Hb_001519_210 0.20572081 - - hypothetical protein B456_003G032500 [Gossypium raimondii]
6 Hb_088410_010 0.2127364935 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_043792_020 0.2132914722 - - Retrotransposon gag protein [Medicago truncatula]
8 Hb_062192_060 0.2137600817 - - maturase (mitochondrion) [Hevea brasiliensis]
9 Hb_097021_010 0.2202172881 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
10 Hb_050334_010 0.2220990902 - - -
11 Hb_014324_010 0.2225117428 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
12 Hb_005742_010 0.2257546343 - - hypothetical protein, partial [Pseudomonas fluorescens]
13 Hb_004212_040 0.2264415126 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_012092_080 0.2280302718 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
15 Hb_171685_030 0.23323246 - - URF-1 [Citrullus lanatus]
16 Hb_002869_070 0.2351144736 - - -
17 Hb_115656_010 0.2401161602 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
18 Hb_001085_210 0.2410844873 - - PREDICTED: myosin-binding protein 3 [Jatropha curcas]
19 Hb_128531_010 0.2430229398 - - phosphoprotein phosphatase, putative [Ricinus communis]
20 Hb_002482_050 0.2478512693 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_142570_010 Hb_142570_010 Hb_002473_140 Hb_002473_140 Hb_142570_010--Hb_002473_140 Hb_159938_010 Hb_159938_010 Hb_142570_010--Hb_159938_010 Hb_041813_050 Hb_041813_050 Hb_142570_010--Hb_041813_050 Hb_001519_210 Hb_001519_210 Hb_142570_010--Hb_001519_210 Hb_088410_010 Hb_088410_010 Hb_142570_010--Hb_088410_010 Hb_043792_020 Hb_043792_020 Hb_142570_010--Hb_043792_020 Hb_002473_140--Hb_088410_010 Hb_002473_140--Hb_159938_010 Hb_002869_070 Hb_002869_070 Hb_002473_140--Hb_002869_070 Hb_050334_010 Hb_050334_010 Hb_002473_140--Hb_050334_010 Hb_002473_140--Hb_001519_210 Hb_154997_010 Hb_154997_010 Hb_002473_140--Hb_154997_010 Hb_159938_010--Hb_043792_020 Hb_159938_010--Hb_154997_010 Hb_159938_010--Hb_002869_070 Hb_159938_010--Hb_001519_210 Hb_159938_010--Hb_088410_010 Hb_062192_060 Hb_062192_060 Hb_041813_050--Hb_062192_060 Hb_005154_090 Hb_005154_090 Hb_041813_050--Hb_005154_090 Hb_003375_050 Hb_003375_050 Hb_041813_050--Hb_003375_050 Hb_041813_010 Hb_041813_010 Hb_041813_050--Hb_041813_010 Hb_012092_080 Hb_012092_080 Hb_041813_050--Hb_012092_080 Hb_185058_020 Hb_185058_020 Hb_041813_050--Hb_185058_020 Hb_001519_210--Hb_050334_010 Hb_001519_210--Hb_043792_020 Hb_012295_020 Hb_012295_020 Hb_001519_210--Hb_012295_020 Hb_032531_010 Hb_032531_010 Hb_001519_210--Hb_032531_010 Hb_012071_010 Hb_012071_010 Hb_001519_210--Hb_012071_010 Hb_001519_210--Hb_002869_070 Hb_002122_020 Hb_002122_020 Hb_088410_010--Hb_002122_020 Hb_088410_010--Hb_002869_070 Hb_088410_010--Hb_050334_010 Hb_005439_010 Hb_005439_010 Hb_043792_020--Hb_005439_010 Hb_043792_020--Hb_154997_010 Hb_128531_010 Hb_128531_010 Hb_043792_020--Hb_128531_010 Hb_043792_020--Hb_050334_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0223065 0.0176109 0.0175706 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.147418 0.128879 0.409606

CAGE analysis