Hb_012092_080

Information

Type -
Description -
Location Contig12092: 58466-61024
Sequence    

Annotation

kegg
ID mdm:103411369
description pentatricopeptide repeat-containing protein At5g15280-like
nr
ID XP_008348229.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
swissprot
ID Q9LFF1
description Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
trembl
ID A0A078DRA7
description BnaC02g05980D protein OS=Brassica napus GN=BnaC02g05980D PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012092_080 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
2 Hb_097021_010 0.1568409363 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
3 Hb_041813_050 0.1806990151 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
4 Hb_001523_030 0.1837705945 - - protein binding protein, putative [Ricinus communis]
5 Hb_012463_010 0.2047749923 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
6 Hb_001282_030 0.2070917525 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
7 Hb_041813_010 0.2141299339 - - conserved hypothetical protein [Ricinus communis]
8 Hb_053998_020 0.2211702999 - - -
9 Hb_142570_010 0.2280302718 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
10 Hb_049275_010 0.231695367 - - PREDICTED: F-box/LRR-repeat protein 4-like [Populus euphratica]
11 Hb_003186_040 0.2332521021 - - PREDICTED: protein DENND6A [Jatropha curcas]
12 Hb_062192_060 0.2388410973 - - maturase (mitochondrion) [Hevea brasiliensis]
13 Hb_005396_060 0.2389363146 - - -
14 Hb_115656_010 0.2392518368 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
15 Hb_185058_020 0.2459008763 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
16 Hb_001341_020 0.246026257 - - Uncharacterised protein [Bordetella pertussis]
17 Hb_014324_010 0.2501605492 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
18 Hb_000022_140 0.2539531204 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
19 Hb_085083_020 0.2548028764 - - PREDICTED: receptor-like protein kinase THESEUS 1 [Jatropha curcas]
20 Hb_002014_070 0.2558206573 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_012092_080 Hb_012092_080 Hb_097021_010 Hb_097021_010 Hb_012092_080--Hb_097021_010 Hb_041813_050 Hb_041813_050 Hb_012092_080--Hb_041813_050 Hb_001523_030 Hb_001523_030 Hb_012092_080--Hb_001523_030 Hb_012463_010 Hb_012463_010 Hb_012092_080--Hb_012463_010 Hb_001282_030 Hb_001282_030 Hb_012092_080--Hb_001282_030 Hb_041813_010 Hb_041813_010 Hb_012092_080--Hb_041813_010 Hb_097021_010--Hb_041813_050 Hb_062192_060 Hb_062192_060 Hb_097021_010--Hb_062192_060 Hb_142570_010 Hb_142570_010 Hb_097021_010--Hb_142570_010 Hb_014324_010 Hb_014324_010 Hb_097021_010--Hb_014324_010 Hb_009848_050 Hb_009848_050 Hb_097021_010--Hb_009848_050 Hb_041813_050--Hb_062192_060 Hb_005154_090 Hb_005154_090 Hb_041813_050--Hb_005154_090 Hb_003375_050 Hb_003375_050 Hb_041813_050--Hb_003375_050 Hb_041813_050--Hb_041813_010 Hb_185058_020 Hb_185058_020 Hb_041813_050--Hb_185058_020 Hb_053998_020 Hb_053998_020 Hb_001523_030--Hb_053998_020 Hb_001523_030--Hb_062192_060 Hb_001523_030--Hb_001282_030 Hb_013420_040 Hb_013420_040 Hb_001523_030--Hb_013420_040 Hb_001523_030--Hb_097021_010 Hb_000414_180 Hb_000414_180 Hb_012463_010--Hb_000414_180 Hb_049365_010 Hb_049365_010 Hb_012463_010--Hb_049365_010 Hb_000454_160 Hb_000454_160 Hb_012463_010--Hb_000454_160 Hb_003938_110 Hb_003938_110 Hb_012463_010--Hb_003938_110 Hb_069147_010 Hb_069147_010 Hb_012463_010--Hb_069147_010 Hb_115656_010 Hb_115656_010 Hb_001282_030--Hb_115656_010 Hb_086607_010 Hb_086607_010 Hb_001282_030--Hb_086607_010 Hb_057451_040 Hb_057451_040 Hb_001282_030--Hb_057451_040 Hb_004212_040 Hb_004212_040 Hb_001282_030--Hb_004212_040 Hb_102602_020 Hb_102602_020 Hb_041813_010--Hb_102602_020 Hb_000076_050 Hb_000076_050 Hb_041813_010--Hb_000076_050 Hb_007520_070 Hb_007520_070 Hb_041813_010--Hb_007520_070 Hb_041813_010--Hb_000454_160 Hb_027010_030 Hb_027010_030 Hb_041813_010--Hb_027010_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0264504 0.0350473 0.00983835 0.0314171 0 0.0231885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0891461 0.113455 0.297826

CAGE analysis