Hb_012463_010

Information

Type -
Description -
Location Contig12463: 61-1488
Sequence    

Annotation

kegg
ID bvg:104901296
description uncharacterized LOC104901296
nr
ID XP_010687151.1
description PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID Q2AA09
description Retrotransposon gag protein OS=Asparagus officinalis GN=20.t00008 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012463_010 0.0 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
2 Hb_012092_080 0.2047749923 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
3 Hb_000414_180 0.2145896478 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
4 Hb_049365_010 0.2148016988 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
5 Hb_000454_160 0.2167113448 - - amidophosphoribosyltransferase, putative [Ricinus communis]
6 Hb_003938_110 0.2400044742 - - polyprotein [Ananas comosus]
7 Hb_069147_010 0.2400090011 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
8 Hb_041813_010 0.24067601 - - conserved hypothetical protein [Ricinus communis]
9 Hb_041813_050 0.2413313659 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
10 Hb_002085_100 0.2443706177 - - PREDICTED: syntaxin-72 isoform X1 [Jatropha curcas]
11 Hb_060658_010 0.2468243908 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
12 Hb_007520_070 0.2492500659 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
13 Hb_007527_040 0.2606112539 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
14 Hb_000022_140 0.2634516183 - - hypothetical protein MIMGU_mgv1a009920mg [Erythranthe guttata]
15 Hb_097021_010 0.2657862962 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
16 Hb_012404_080 0.2661632535 - - PREDICTED: ABC transporter G family member 34-like [Jatropha curcas]
17 Hb_018272_050 0.2687309816 - - hypothetical protein VITISV_037409 [Vitis vinifera]
18 Hb_159308_020 0.2689511185 - - hypothetical protein B456_002G027900 [Gossypium raimondii]
19 Hb_010068_050 0.2690695501 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
20 Hb_044380_020 0.2705118319 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_012463_010 Hb_012463_010 Hb_012092_080 Hb_012092_080 Hb_012463_010--Hb_012092_080 Hb_000414_180 Hb_000414_180 Hb_012463_010--Hb_000414_180 Hb_049365_010 Hb_049365_010 Hb_012463_010--Hb_049365_010 Hb_000454_160 Hb_000454_160 Hb_012463_010--Hb_000454_160 Hb_003938_110 Hb_003938_110 Hb_012463_010--Hb_003938_110 Hb_069147_010 Hb_069147_010 Hb_012463_010--Hb_069147_010 Hb_097021_010 Hb_097021_010 Hb_012092_080--Hb_097021_010 Hb_041813_050 Hb_041813_050 Hb_012092_080--Hb_041813_050 Hb_001523_030 Hb_001523_030 Hb_012092_080--Hb_001523_030 Hb_001282_030 Hb_001282_030 Hb_012092_080--Hb_001282_030 Hb_041813_010 Hb_041813_010 Hb_012092_080--Hb_041813_010 Hb_062013_010 Hb_062013_010 Hb_000414_180--Hb_062013_010 Hb_005288_060 Hb_005288_060 Hb_000414_180--Hb_005288_060 Hb_001793_030 Hb_001793_030 Hb_000414_180--Hb_001793_030 Hb_000329_080 Hb_000329_080 Hb_000414_180--Hb_000329_080 Hb_001080_150 Hb_001080_150 Hb_000414_180--Hb_001080_150 Hb_000414_180--Hb_000454_160 Hb_014324_010 Hb_014324_010 Hb_049365_010--Hb_014324_010 Hb_049365_010--Hb_069147_010 Hb_000260_730 Hb_000260_730 Hb_049365_010--Hb_000260_730 Hb_131320_010 Hb_131320_010 Hb_049365_010--Hb_131320_010 Hb_034197_020 Hb_034197_020 Hb_049365_010--Hb_034197_020 Hb_012404_080 Hb_012404_080 Hb_000454_160--Hb_012404_080 Hb_011609_210 Hb_011609_210 Hb_000454_160--Hb_011609_210 Hb_018272_050 Hb_018272_050 Hb_000454_160--Hb_018272_050 Hb_000977_150 Hb_000977_150 Hb_000454_160--Hb_000977_150 Hb_002518_180 Hb_002518_180 Hb_000454_160--Hb_002518_180 Hb_000875_070 Hb_000875_070 Hb_003938_110--Hb_000875_070 Hb_008511_140 Hb_008511_140 Hb_003938_110--Hb_008511_140 Hb_003938_110--Hb_012404_080 Hb_002311_260 Hb_002311_260 Hb_003938_110--Hb_002311_260 Hb_009296_050 Hb_009296_050 Hb_003938_110--Hb_009296_050 Hb_044380_020 Hb_044380_020 Hb_003938_110--Hb_044380_020 Hb_004052_060 Hb_004052_060 Hb_069147_010--Hb_004052_060 Hb_009848_060 Hb_009848_060 Hb_069147_010--Hb_009848_060 Hb_069147_010--Hb_000414_180 Hb_185058_020 Hb_185058_020 Hb_069147_010--Hb_185058_020 Hb_069147_010--Hb_041813_050 Hb_069147_010--Hb_044380_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0290055 0.0818125 0 0.232369 0 0.0694261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0260051 0.14629 0.322011 0.705752

CAGE analysis