Hb_034197_020

Information

Type -
Description -
Location Contig34197: 5732-9566
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa016013mg
description hypothetical protein
nr
ID CAN68499.1
description hypothetical protein VITISV_041099 [Vitis vinifera]
swissprot
ID O93209
description Pro-Pol polyprotein OS=Feline foamy virus GN=pol PE=3 SV=1
trembl
ID A5C070
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041099 PE=4 SV=1
Gene Ontology
ID GO:0003677
description gag-pol polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034197_020 0.0 - - hypothetical protein VITISV_041099 [Vitis vinifera]
2 Hb_002482_050 0.1600259973 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
3 Hb_003375_050 0.1677435153 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_000803_230 0.180668955 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
5 Hb_005920_030 0.181094077 - - putative polyprotein [Oryza sativa Japonica Group]
6 Hb_000567_270 0.1829470283 - - hypothetical protein L484_017162 [Morus notabilis]
7 Hb_003311_020 0.1844169761 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001174_050 0.1926126378 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_001542_010 0.1944163082 - - hypothetical protein, partial [Pseudomonas fluorescens]
10 Hb_062192_060 0.198036927 - - maturase (mitochondrion) [Hevea brasiliensis]
11 Hb_000260_730 0.1981667706 - - -
12 Hb_000346_050 0.1984145422 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
13 Hb_002687_070 0.1992572472 - - polyprotein [Ananas comosus]
14 Hb_041813_050 0.1996395177 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
15 Hb_019654_170 0.1997232718 transcription factor TF Family: ARID PREDICTED: high mobility group B protein 9 [Jatropha curcas]
16 Hb_003994_070 0.2000864959 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
17 Hb_102602_020 0.2019362732 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
18 Hb_155423_010 0.2032515936 - - -
19 Hb_006405_040 0.2040589103 - - hypothetical protein VITISV_026680 [Vitis vinifera]
20 Hb_002447_100 0.2070074602 - - hypothetical protein POPTR_0009s06260g [Populus trichocarpa]

Gene co-expression network

sample Hb_034197_020 Hb_034197_020 Hb_002482_050 Hb_002482_050 Hb_034197_020--Hb_002482_050 Hb_003375_050 Hb_003375_050 Hb_034197_020--Hb_003375_050 Hb_000803_230 Hb_000803_230 Hb_034197_020--Hb_000803_230 Hb_005920_030 Hb_005920_030 Hb_034197_020--Hb_005920_030 Hb_000567_270 Hb_000567_270 Hb_034197_020--Hb_000567_270 Hb_003311_020 Hb_003311_020 Hb_034197_020--Hb_003311_020 Hb_062192_060 Hb_062192_060 Hb_002482_050--Hb_062192_060 Hb_013420_090 Hb_013420_090 Hb_002482_050--Hb_013420_090 Hb_006040_050 Hb_006040_050 Hb_002482_050--Hb_006040_050 Hb_027357_010 Hb_027357_010 Hb_002482_050--Hb_027357_010 Hb_002687_070 Hb_002687_070 Hb_002482_050--Hb_002687_070 Hb_005154_090 Hb_005154_090 Hb_003375_050--Hb_005154_090 Hb_041813_050 Hb_041813_050 Hb_003375_050--Hb_041813_050 Hb_003375_050--Hb_002482_050 Hb_003375_050--Hb_062192_060 Hb_151401_010 Hb_151401_010 Hb_003375_050--Hb_151401_010 Hb_000803_230--Hb_005920_030 Hb_000346_050 Hb_000346_050 Hb_000803_230--Hb_000346_050 Hb_019654_170 Hb_019654_170 Hb_000803_230--Hb_019654_170 Hb_043792_030 Hb_043792_030 Hb_000803_230--Hb_043792_030 Hb_001174_050 Hb_001174_050 Hb_000803_230--Hb_001174_050 Hb_003994_070 Hb_003994_070 Hb_000803_230--Hb_003994_070 Hb_008055_030 Hb_008055_030 Hb_005920_030--Hb_008055_030 Hb_001856_280 Hb_001856_280 Hb_005920_030--Hb_001856_280 Hb_005920_030--Hb_043792_030 Hb_005920_030--Hb_003311_020 Hb_005920_030--Hb_019654_170 Hb_005920_030--Hb_000567_270 Hb_000567_270--Hb_003311_020 Hb_032016_010 Hb_032016_010 Hb_000567_270--Hb_032016_010 Hb_007533_050 Hb_007533_050 Hb_000567_270--Hb_007533_050 Hb_000644_020 Hb_000644_020 Hb_000567_270--Hb_000644_020 Hb_009851_090 Hb_009851_090 Hb_000567_270--Hb_009851_090 Hb_006455_020 Hb_006455_020 Hb_000567_270--Hb_006455_020 Hb_003311_020--Hb_003994_070 Hb_003311_020--Hb_032016_010 Hb_003311_020--Hb_009851_090 Hb_003311_020--Hb_007533_050 Hb_000432_020 Hb_000432_020 Hb_003311_020--Hb_000432_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0678758 0 0.035505 0.00653457 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0238078 0.148379 0.610666

CAGE analysis