Hb_049365_010

Information

Type -
Description -
Location Contig49365: 3087-5556
Sequence    

Annotation

kegg
ID egr:104420290
description probable LRR receptor-like serine/threonine-protein kinase At3g47570
nr
ID XP_010030459.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID K7M261
description Uncharacterized protein OS=Glycine max PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45392: 4960-5162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_049365_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Eucalyptus grandis]
2 Hb_014324_010 0.2131958803 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
3 Hb_012463_010 0.2148016988 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
4 Hb_069147_010 0.2151650369 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At4g27220 isoform X1 [Populus euphratica]
5 Hb_000260_730 0.2208160896 - - -
6 Hb_131320_010 0.2256669617 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
7 Hb_034197_020 0.2312984004 - - hypothetical protein VITISV_041099 [Vitis vinifera]
8 Hb_000169_100 0.234887021 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Fragaria vesca subsp. vesca]
9 Hb_004052_060 0.2394129195 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
10 Hb_000454_160 0.2461753966 - - amidophosphoribosyltransferase, putative [Ricinus communis]
11 Hb_000675_040 0.2464050083 - - hypothetical protein OsI_02937 [Oryza sativa Indica Group]
12 Hb_129046_010 0.2473638455 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Elaeis guineensis]
13 Hb_002122_050 0.2484487486 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_009848_060 0.2497500603 - - unknown [Glycine max]
15 Hb_029727_010 0.2513364126 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
16 Hb_000414_180 0.2549051198 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Vitis vinifera]
17 Hb_041813_050 0.2583858364 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
18 Hb_155423_010 0.2606163187 - - -
19 Hb_006594_080 0.2636490024 - - beta-glucosidase, putative [Ricinus communis]
20 Hb_097021_010 0.2640330866 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_049365_010 Hb_049365_010 Hb_014324_010 Hb_014324_010 Hb_049365_010--Hb_014324_010 Hb_012463_010 Hb_012463_010 Hb_049365_010--Hb_012463_010 Hb_069147_010 Hb_069147_010 Hb_049365_010--Hb_069147_010 Hb_000260_730 Hb_000260_730 Hb_049365_010--Hb_000260_730 Hb_131320_010 Hb_131320_010 Hb_049365_010--Hb_131320_010 Hb_034197_020 Hb_034197_020 Hb_049365_010--Hb_034197_020 Hb_001096_020 Hb_001096_020 Hb_014324_010--Hb_001096_020 Hb_009848_050 Hb_009848_050 Hb_014324_010--Hb_009848_050 Hb_008033_060 Hb_008033_060 Hb_014324_010--Hb_008033_060 Hb_097021_010 Hb_097021_010 Hb_014324_010--Hb_097021_010 Hb_142570_010 Hb_142570_010 Hb_014324_010--Hb_142570_010 Hb_012092_080 Hb_012092_080 Hb_012463_010--Hb_012092_080 Hb_000414_180 Hb_000414_180 Hb_012463_010--Hb_000414_180 Hb_000454_160 Hb_000454_160 Hb_012463_010--Hb_000454_160 Hb_003938_110 Hb_003938_110 Hb_012463_010--Hb_003938_110 Hb_012463_010--Hb_069147_010 Hb_004052_060 Hb_004052_060 Hb_069147_010--Hb_004052_060 Hb_009848_060 Hb_009848_060 Hb_069147_010--Hb_009848_060 Hb_069147_010--Hb_000414_180 Hb_185058_020 Hb_185058_020 Hb_069147_010--Hb_185058_020 Hb_041813_050 Hb_041813_050 Hb_069147_010--Hb_041813_050 Hb_044380_020 Hb_044380_020 Hb_069147_010--Hb_044380_020 Hb_017225_030 Hb_017225_030 Hb_000260_730--Hb_017225_030 Hb_008834_010 Hb_008834_010 Hb_000260_730--Hb_008834_010 Hb_029727_010 Hb_029727_010 Hb_000260_730--Hb_029727_010 Hb_001856_280 Hb_001856_280 Hb_000260_730--Hb_001856_280 Hb_001005_040 Hb_001005_040 Hb_000260_730--Hb_001005_040 Hb_000169_100 Hb_000169_100 Hb_000260_730--Hb_000169_100 Hb_000675_040 Hb_000675_040 Hb_131320_010--Hb_000675_040 Hb_072173_010 Hb_072173_010 Hb_131320_010--Hb_072173_010 Hb_000600_080 Hb_000600_080 Hb_131320_010--Hb_000600_080 Hb_145211_010 Hb_145211_010 Hb_131320_010--Hb_145211_010 Hb_008144_010 Hb_008144_010 Hb_131320_010--Hb_008144_010 Hb_129046_010 Hb_129046_010 Hb_131320_010--Hb_129046_010 Hb_002482_050 Hb_002482_050 Hb_034197_020--Hb_002482_050 Hb_003375_050 Hb_003375_050 Hb_034197_020--Hb_003375_050 Hb_000803_230 Hb_000803_230 Hb_034197_020--Hb_000803_230 Hb_005920_030 Hb_005920_030 Hb_034197_020--Hb_005920_030 Hb_000567_270 Hb_000567_270 Hb_034197_020--Hb_000567_270 Hb_003311_020 Hb_003311_020 Hb_034197_020--Hb_003311_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0562278 0 0.0717988 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0217195 0.0409649 0.216439 0.365047

CAGE analysis