Hb_097021_010

Information

Type -
Description -
Location Contig97021: 278-2522
Sequence    

Annotation

kegg
ID pop:POPTR_0075s00200g
description hypothetical protein
nr
ID XP_006388915.1
description hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
swissprot
ID Q7X8C5
description Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1
trembl
ID U7E044
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0075s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63946: 2384-2712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097021_010 0.0 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
2 Hb_012092_080 0.1568409363 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280-like [Malus domestica]
3 Hb_041813_050 0.1846749612 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
4 Hb_062192_060 0.2194048314 - - maturase (mitochondrion) [Hevea brasiliensis]
5 Hb_142570_010 0.2202172881 - - PREDICTED: uncharacterized protein LOC104907573 [Beta vulgaris subsp. vulgaris]
6 Hb_014324_010 0.2224372988 - - hypothetical protein JCGZ_05575 [Jatropha curcas]
7 Hb_009848_050 0.2238126698 - - PREDICTED: proline-rich receptor-like protein kinase PERK13 [Elaeis guineensis]
8 Hb_011287_070 0.2279522607 - - -
9 Hb_185058_020 0.2336691717 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
10 Hb_102602_020 0.2424807253 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
11 Hb_000260_730 0.2443974376 - - -
12 Hb_087161_010 0.2450195664 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_009848_060 0.2481661605 - - unknown [Glycine max]
14 Hb_041813_010 0.2482015036 - - conserved hypothetical protein [Ricinus communis]
15 Hb_053998_020 0.2516668979 - - -
16 Hb_001523_030 0.2549337361 - - protein binding protein, putative [Ricinus communis]
17 Hb_034197_020 0.2601086138 - - hypothetical protein VITISV_041099 [Vitis vinifera]
18 Hb_004520_010 0.2613704749 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
19 Hb_003186_040 0.2628183408 - - PREDICTED: protein DENND6A [Jatropha curcas]
20 Hb_003183_010 0.2636106664 - - PREDICTED: uncharacterized protein LOC105785048, partial [Gossypium raimondii]

Gene co-expression network

sample Hb_097021_010 Hb_097021_010 Hb_012092_080 Hb_012092_080 Hb_097021_010--Hb_012092_080 Hb_041813_050 Hb_041813_050 Hb_097021_010--Hb_041813_050 Hb_062192_060 Hb_062192_060 Hb_097021_010--Hb_062192_060 Hb_142570_010 Hb_142570_010 Hb_097021_010--Hb_142570_010 Hb_014324_010 Hb_014324_010 Hb_097021_010--Hb_014324_010 Hb_009848_050 Hb_009848_050 Hb_097021_010--Hb_009848_050 Hb_012092_080--Hb_041813_050 Hb_001523_030 Hb_001523_030 Hb_012092_080--Hb_001523_030 Hb_012463_010 Hb_012463_010 Hb_012092_080--Hb_012463_010 Hb_001282_030 Hb_001282_030 Hb_012092_080--Hb_001282_030 Hb_041813_010 Hb_041813_010 Hb_012092_080--Hb_041813_010 Hb_041813_050--Hb_062192_060 Hb_005154_090 Hb_005154_090 Hb_041813_050--Hb_005154_090 Hb_003375_050 Hb_003375_050 Hb_041813_050--Hb_003375_050 Hb_041813_050--Hb_041813_010 Hb_185058_020 Hb_185058_020 Hb_041813_050--Hb_185058_020 Hb_002482_050 Hb_002482_050 Hb_062192_060--Hb_002482_050 Hb_062192_060--Hb_005154_090 Hb_003362_020 Hb_003362_020 Hb_062192_060--Hb_003362_020 Hb_171685_030 Hb_171685_030 Hb_062192_060--Hb_171685_030 Hb_003746_020 Hb_003746_020 Hb_062192_060--Hb_003746_020 Hb_002473_140 Hb_002473_140 Hb_142570_010--Hb_002473_140 Hb_159938_010 Hb_159938_010 Hb_142570_010--Hb_159938_010 Hb_142570_010--Hb_041813_050 Hb_001519_210 Hb_001519_210 Hb_142570_010--Hb_001519_210 Hb_088410_010 Hb_088410_010 Hb_142570_010--Hb_088410_010 Hb_043792_020 Hb_043792_020 Hb_142570_010--Hb_043792_020 Hb_001096_020 Hb_001096_020 Hb_014324_010--Hb_001096_020 Hb_014324_010--Hb_009848_050 Hb_049365_010 Hb_049365_010 Hb_014324_010--Hb_049365_010 Hb_008033_060 Hb_008033_060 Hb_014324_010--Hb_008033_060 Hb_014324_010--Hb_142570_010 Hb_009848_060 Hb_009848_060 Hb_009848_050--Hb_009848_060 Hb_010490_060 Hb_010490_060 Hb_009848_050--Hb_010490_060 Hb_009848_050--Hb_185058_020 Hb_000137_060 Hb_000137_060 Hb_009848_050--Hb_000137_060 Hb_001571_020 Hb_001571_020 Hb_009848_050--Hb_001571_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0381193 0.0381296 0.0150463 0.0305874 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0635497 0.137438 0.353395

CAGE analysis