Hb_003362_020

Information

Type -
Description -
Location Contig3362: 2095-13730
Sequence    

Annotation

kegg
ID tcc:TCM_033345
description DNA/RNA polymerases superfamily protein
nr
ID XP_009603456.1
description PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
swissprot
ID P0CT43
description Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1
trembl
ID Q6F2D6
description Putative polyprotein, identical OS=Solanum demissum GN=SDM1_49t00014 PE=4 SV=2
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003362_020 0.0 - - PREDICTED: uncharacterized protein LOC104098435, partial [Nicotiana tomentosiformis]
2 Hb_062192_060 0.1702463864 - - maturase (mitochondrion) [Hevea brasiliensis]
3 Hb_041813_050 0.1873764655 - - hypothetical protein NitaMp096 [Nicotiana tabacum]
4 Hb_088080_030 0.192611201 - - ribosomal protein S4 [Hevea brasiliensis]
5 Hb_062273_010 0.1988754788 - - ATP synthase F0 subunit 9 [Chara vulgaris]
6 Hb_004987_030 0.1989785784 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
7 Hb_072212_020 0.2021642238 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
8 Hb_102602_020 0.2046023325 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
9 Hb_000710_160 0.2105575881 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
10 Hb_001385_070 0.2118991355 - - hypothetical protein VITISV_019194 [Vitis vinifera]
11 Hb_168031_020 0.2123840201 - - PREDICTED: uncharacterized protein LOC105646684 isoform X2 [Jatropha curcas]
12 Hb_000518_040 0.2125265952 - - -
13 Hb_005154_090 0.2162174283 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_006405_040 0.2186252438 - - hypothetical protein VITISV_026680 [Vitis vinifera]
15 Hb_042463_020 0.2195142161 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003746_020 0.219595336 - - PREDICTED: magnesium-chelatase subunit ChlH, chloroplastic [Gossypium raimondii]
17 Hb_127552_050 0.2206455833 - - hypothetical protein VITISV_030752 [Vitis vinifera]
18 Hb_000159_020 0.2223651468 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
19 Hb_041813_010 0.2233151004 - - conserved hypothetical protein [Ricinus communis]
20 Hb_171685_040 0.2254852359 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]

Gene co-expression network

sample Hb_003362_020 Hb_003362_020 Hb_062192_060 Hb_062192_060 Hb_003362_020--Hb_062192_060 Hb_041813_050 Hb_041813_050 Hb_003362_020--Hb_041813_050 Hb_088080_030 Hb_088080_030 Hb_003362_020--Hb_088080_030 Hb_062273_010 Hb_062273_010 Hb_003362_020--Hb_062273_010 Hb_004987_030 Hb_004987_030 Hb_003362_020--Hb_004987_030 Hb_072212_020 Hb_072212_020 Hb_003362_020--Hb_072212_020 Hb_002482_050 Hb_002482_050 Hb_062192_060--Hb_002482_050 Hb_062192_060--Hb_041813_050 Hb_005154_090 Hb_005154_090 Hb_062192_060--Hb_005154_090 Hb_171685_030 Hb_171685_030 Hb_062192_060--Hb_171685_030 Hb_003746_020 Hb_003746_020 Hb_062192_060--Hb_003746_020 Hb_041813_050--Hb_005154_090 Hb_003375_050 Hb_003375_050 Hb_041813_050--Hb_003375_050 Hb_041813_010 Hb_041813_010 Hb_041813_050--Hb_041813_010 Hb_012092_080 Hb_012092_080 Hb_041813_050--Hb_012092_080 Hb_185058_020 Hb_185058_020 Hb_041813_050--Hb_185058_020 Hb_189099_020 Hb_189099_020 Hb_088080_030--Hb_189099_020 Hb_000920_020 Hb_000920_020 Hb_088080_030--Hb_000920_020 Hb_088080_030--Hb_003746_020 Hb_062192_030 Hb_062192_030 Hb_088080_030--Hb_062192_030 Hb_088080_030--Hb_072212_020 Hb_041813_030 Hb_041813_030 Hb_088080_030--Hb_041813_030 Hb_062273_010--Hb_072212_020 Hb_042463_020 Hb_042463_020 Hb_062273_010--Hb_042463_020 Hb_034168_070 Hb_034168_070 Hb_062273_010--Hb_034168_070 Hb_062273_010--Hb_062192_030 Hb_104735_020 Hb_104735_020 Hb_062273_010--Hb_104735_020 Hb_062273_010--Hb_189099_020 Hb_000012_440 Hb_000012_440 Hb_004987_030--Hb_000012_440 Hb_000699_080 Hb_000699_080 Hb_004987_030--Hb_000699_080 Hb_006925_030 Hb_006925_030 Hb_004987_030--Hb_006925_030 Hb_004987_030--Hb_088080_030 Hb_000120_900 Hb_000120_900 Hb_004987_030--Hb_000120_900 Hb_159305_010 Hb_159305_010 Hb_004987_030--Hb_159305_010 Hb_072212_020--Hb_062192_030 Hb_072212_020--Hb_042463_020 Hb_072212_020--Hb_189099_020 Hb_072212_020--Hb_034168_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00344232 0.0160235 0.00638984 0.0040339 0.0106178 0.00492516
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00496642 0.0191715 0.0294556 0.20331

CAGE analysis